BAC Information

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BAC

Clone NameMSMg01-441J13
Chromosome15 (Build37)
Map Location 30,040,874 - 30,041,101
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382975
Downstream geneCtnnd2, 9630009A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441J13.T7 (MSMg01no441_j13.b1)MSMg01-441J13.TJ (MSMg01no441_j13.g1)
ACCAG531441AG531442
length802736
length of high quality
(start - end)
228 (85 - 312)567 (80 - 646)
definitionCHROMAT_FILE: MSMg01no441_j13.b1 PHD_FILE: MSMg01no441_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:26 2005CHROMAT_FILE: MSMg01no441_j13.g1 PHD_FILE: MSMg01no441_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAANTCTTCATTTCCTTGCACCTGNNGNGNTGGAGATAATTTTAATA
AACACAGCCTACAAATAAAATTACACAGGATATTTTTCTCAATGAATAAT
AGCTATTTAGCCTCTAAGAAAATATTTAGTATTGAAGACATATTTAATAT
ATAATTTGGACAAAGTTTTAAAAATAATTATTAAAATTAAAGTAAGATAA
TACATCTAGGTGTGGTGGAAATATGGGAAGAGTTGGAAAGGAATGGGTAT
GGGTTTTTTAATTTATTTTTTTTCTTTTATGCACGCATAAAACTCCCCCC
TATTTTCTATTTTTATATTGCCCCTGCCTGCATGAGTATTTCCGCACTGA
TATACATCTTCATCGGTTACCTGATTTTACCTAACCCTTTTATCTCCTCT
TTTTAATTTTCTGCGCGCGCACCCCCGGTCCATCCTTAATCCTTTGTCTA
CCCCTTTTACCCTCAGTTCCTACGCCCCTCTTTTGTGTTTATGTCCCATC
GCTTTTTTTTATCCTCTCCCCTCTCCCCTTCTTTTTCTCTCTCCCCCCCT
TTCTCTCATTTTTATCTCCCCGTTTCCCCTTTTCTCTTCTTCCCCCTTAT
CACATCACCTCCTTTTACTTTTTTTTTCCCCTATTCGCTTCCCCCTTTTT
TTTTTTCTTTCTTCCTGTGATTCCCATTTTCTTCATCTTCTTACTTTCTT
TTTATTCCGTTTTAGTTTTGCCCTCCGTCCGTTTTCTCTTCTTTCCCCCT
TT
NTTTCGATGATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGCCTCTTATGTTCTGCA
CCTTGATAGAATCTGGGTTGCTATTTACTTACCTATAACAAAACTAGAAA
CTTCTCTGATAAGGGTGAGAGATGCATTAATCTACAGGTATAACAGTAAC
TCAGGACTTGGTTTAATACAGTATCCACTTACCAGTATACTTGTAGTAGG
TCCTACTCAAGGGCATATGATCTGTCTAGCTCCAGGTTCTTGGAGCTCTA
ATGGCACCCCTGGTGTTGAATTCATCTTAAGAATTGAAACTTTAGCCCAA
ACAAAATATCTGGTTACTCCCACGATATTCCTACCTCCATTGGATAGGTA
GAGTAGGTATGTCTTACCAGGCTATTCATTATTGAAGGGTTCTCACTGGG
AAAAAAAAATGGTCTCATTTCCAGGTTCAAGCCTGATAATTATTTTTTCC
TCTTCTACAGCATACATAGCACCTCCAGCACTATAAAAGTTAGCCAGGAA
AATTAAGTTTCTAGGTAATTCTGACAGCAATGGTGGGAGTCTCTGCTACC
TGACCATCCAGAAACCCCAACAGAAGCAATGTATTTCTTACTGGGATTGT
TCTTTGTGAGGCTATCATGTTTATCGGCATATTACCCCTCTTACAGGGTA
GCTCCATATTAAGTCTTATCTATGTATACATATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_j13.b1 MSMg01no441_j13.b1 CHROMAT_FILE:
MSMg01no441_j13.b1 PHD_FILE: MSMg01no441_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:26 2005
         (228 letters)



>mm_chr15_30040771_30041398
          Length = 628

 Score =  441 bits (228), Expect = e-128
 Identities = 228/228 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagataattttaataaacacagcctacaaataaaattacacaggatatttttctcaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggagataattttaataaacacagcctacaaataaaattacacaggatatttttctcaatg 272

                                                                       
Query: 61  aataatagctatttagcctctaagaaaatatttagtattgaagacatatttaatatataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aataatagctatttagcctctaagaaaatatttagtattgaagacatatttaatatataa 212

                                                                       
Query: 121 tttggacaaagttttaaaaataattattaaaattaaagtaagataatacatctaggtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tttggacaaagttttaaaaataattattaaaattaaagtaagataatacatctaggtgtg 152

                                                           
Query: 181 gtggaaatatgggaagagttggaaaggaatgggtatgggttttttaat 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gtggaaatatgggaagagttggaaaggaatgggtatgggttttttaat 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)