Query= MSMg01no441_p04.b1 MSMg01no441_p04.b1 CHROMAT_FILE:
MSMg01no441_p04.b1 PHD_FILE: MSMg01no441_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:55 2005
(561 letters)
>mm_chr15_90293011_90293971
Length = 961
Score = 984 bits (509), Expect = 0.0
Identities = 542/559 (96%), Gaps = 12/559 (2%)
Strand = Plus / Plus
Query: 4 ggaattctcaactgtac-aatcttgaatggcctagaagcatttaaagaaatgttcaacat 62
|||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 214 ggaattctcaactg-aggaatcttgaatggcctagaagcatttaaagaaatgtttaacat 272
Query: 63 cctagtcatcagggaaatgcaaattaaaacaaccctgagattctaccttacaccaatcag 122
| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 273 cttagtcatctgggaaatgcaa----------ccctgagattctaccttacaccaatcag 322
Query: 123 aatggctaagataaaaaacctcatgtgacagcagatgccggcgaggatgtagagaaagag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatggctaagataaaaaacctcatgtgacagcagatgccggcgaggatgtagagaaagag 382
Query: 183 gcatactcggccattgctggtgggattgcaaactggtcctaagccatttctatttaatct 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcatacttggccattgctggtgggattgcaaactggtcctaagccatttctatttaatct 442
Query: 243 tgtctgtattgccaatcgctatacattttctgcaagagttggctccaaatgtcacttgtc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtctgtattgccaatcgctatacattttctgcaagagttggctccaaatgtcacttgtc 502
Query: 303 agttaagtagtacattgcatatagaacccacttgaagattgctccagttggcagaacagc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agttaagtagtacattgcatatagaacccacttgaagattgctccagttggcagaacagc 562
Query: 363 attgcaggctcgccctttaggtccccatttggcaactgaacacatccctttactttatag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 attgcaggctcgccctttaggtccccatttggcaactgaacacatccctttactttatag 622
Query: 423 tctctattctcaaaatgaccccatgacaacatctactttctagaagcaaattggaattta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tctctattctcaaaatgaccccatgacaacatctactttctagaagcaaattggaattta 682
Query: 483 gttaatacttccttcaagtagcttgttctcaaaattacctttcttgtaaatttaagttat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gttaatacttccttcaagtagcttgttctcaaaattacctttcttgtaaatttaagttat 742
Query: 543 tttatgtttattctttctc 561
|||||||||||||||||||
Sbjct: 743 tttatgtttattctttctc 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_p04.g1 MSMg01no441_p04.g1 CHROMAT_FILE:
MSMg01no441_p04.g1 PHD_FILE: MSMg01no441_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:55 2005
(501 letters)
>mm_chr15_90459797_90460697
Length = 901
Score = 779 bits (403), Expect = 0.0
Identities = 433/443 (97%)
Strand = Plus / Minus
Query: 1 catgccacacttaaagccacaaattcatcaaactgcaccacagcctgtgatatagctcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catgccacacttaaagccacaaattcatcaaactgcaccacagcctgtgatatagctcac 384
Query: 61 tgagtactatgcagcatcaggtttgaccaaggcctattctgctatctgagatccaatgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgagtactatgcagcatcaggtttgaccaaggcctattctgctatctgagatccaatgct 324
Query: 121 gaagtagatttataacctaagatactgcagccacaaagtgtggccaaaagaaaagtctca 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaagtagatttatgacctaagatactgcagccacaaagtgtggccaaaagaaaagtctca 264
Query: 181 tggactgaaaatgacatctcttcttgatgctggccctcttcccaactgtggacgctggcc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tggactgaaagtgacatctcttcttgatgctggccctcttcccaactgtggacgctggcc 204
Query: 241 tgttcttgcccgagctagtatctcgccggcaagaattcactcagacaaccggatccttct 300
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 203 tgttcttgcccgagctagtatctcgccggcaagaattcactcggacaactggatccttct 144
Query: 301 atggcaaagcttttattgcttcaacataaggaagaccccgaacccggaaaatggcgctgc 360
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 143 acggcaaagcttttattgcttcaacataaggaagaccccgaactcggaaaatggcgctgc 84
Query: 361 ttatataacctgcagtgtgacgtttcagcacctgatgtggcgtgacagcacctgattagt 420
||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 83 ttatatagcccgcagcgtgacgtttcagcacctgatgtggcatgacagcacctgattagt 24
Query: 421 tgcttgcccatcaccccattact 443
|||||||||||||||||||||||
Sbjct: 23 tgcttgcccatcaccccattact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
