BAC Information

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BAC

Clone NameMSMg01-443K15
Chromosome15 (Build37)
Map Location 83,393,793 - 83,393,982
singlet/doubletsinglet
Overlap genenone
Upstream geneBC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat
Downstream geneTspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443K15.T7 (MSMg01no443_k15.b1)MSMg01-443K15.TJ (MSMg01no443_k15.g1)
ACCAG533017AG533018
length1,155723
length of high quality
(start - end)
---190 (126 - 315)
definitionCHROMAT_FILE: MSMg01no443_k15.b1 PHD_FILE: MSMg01no443_k15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:20 2005CHROMAT_FILE: MSMg01no443_k15.g1 PHD_FILE: MSMg01no443_k15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCTCAGGACAACCGATCATTTTCGGGCGCGGCCGGCTCGTCGCGGTCT
TGTTTTATGTGTCTGCCAGGCGGCCACGGCCGATACAATATACGTCCCTC
GCGCATAACATTTCGAACACAACACCTGTCACGTTAGTACGTTTATTGTA
GATTTTATTAGCACGGCGGAGGGACGGGAGCTACCAGTACCGGCACCCGC
ATAAATTACAACAACAATATAGACGTGGATTACACGCGTAGCAGCCCCGC
TACGCTACATAATAGCANTCGGGTGTGCATAGTGGTAAAAGTAGGCGGAG
CGGGCACATCGGGGGGGGGATACCCGTATTTGGTGCTCTACCGCACCACG
GCGCACGAACGAGTAATTGGTGGATTACGGAGGTGAATATAGATTATGTC
GTGAGCGTTTACACAGGAGACGCAATAGAAATTCGAAAATCCAAGTGTGT
AATAACTCGCCGGCCGCCCGCGAGGTATCAGACGTTTAACTTATGATATG
GCAATGCGAGCGCGTCTGCGACATCCGCGCGGTACTTTTTTTATAAATAA
CCTATCTATTCGCCACCCCACACCGCGTATTCGCCTCTTAATAGTATGTA
CCGCAAATCTAACGGCGGTGCTGACGCAATCTCGTCTTGTTCTATACCAC
CCGGCGCCCAACAACTATTAGTGCGGCCCTTCTCGTACTTATCTCCACGC
GCCTATTTTCATTGTACGGCGGCAAGTAAAAAAAACACCGGAAGCCGCGC
GCTTTTCACCGCTATGCGAGATTGTGTCGTTATGCTGTCACCATTCTATT
GTTGTGCCAGATCACACGCCCCGTTGTTTGTACGCACATATATATTTATT
TGTCGTCACAACATCTCACTTTATTGTATGCCGCTGTTCGCCTATATTTA
TCGACAACGCGCCGCGTGTTATTTCTAAGATGTATGATAAGACATTTGTT
GATCATAGACAGCCCGCTATCTTTGTTTTTATGGTGTTTCTTTATTATAC
CACACACCCGCGGCCTTACTGCGTCTTTATGACGGAGATTCTATTTTGGC
GCGCGTGTTCGTGTATGTCTCCATTTTTATATATAAATACGGCGGTATAC
TCTTTATGCCNCGACTATACCGCTTAGTACACTATTCATGTGTCANTTAG
CGCCN
ACTATGCAGTGNGAGGCCTGGAGGNCGCCTGGCCTTCCCGACCGGGNGAA
CNANAGAAGGATTTCCAACATCAGCGAGGCACAGNGGNGGGGGGGGGGAA
ATAANACGCAGCTCATACTGACCGCGAGCTCACTGTCATCCTCCTGTCTC
AGGTGTGAAATATAAACATGTGCCACCTCTGTGGCATTCGTTGTCTGCCT
GTCTGCGATGCATCTCTCCCCTCTGTGTCCAGGCCCACGATGAGAAGATA
TTTTATAGGGGTGCCTGGTTGAGGGCGGGCCTGGGAAGGCAGGGTGCCTC
CGGGTGCGGCGCAGGTTGTTTTTTTTTTCGAGGCGGGGACAGCGGCAACC
AACCNCAGNGCGTAGTGTCCCCCACGGAACAACCAGCGACTGCGNGAGCG
GGGCTGNGGGAACGAGAGACCCTGACTTGTTTGAGCCAAAAGGGAAACTG
AGGCCAGGTCCAAGCGGGAGGGACTCCTCCCGAGGATGTGTTGCTGAGGT
TGACGGTGTTTGGCCTTTGGGGACAGCGTCCAATGTCCTGTGCCTACCTC
GGTGAGGCAGGAGCGGCTGCTGCAGCTGGAGGCAGCTGGGCGGCAAGAGG
AGATAGCCTCTGGCTGCTGGGAATCCTGCTTCCCCTGTATAGGAGCTCTG
GGATTCGTTTTACAACGAGACTATGCCAAGCCCATGCATTTTACCCAGTA
TTTGACCCGCACCCGCCTAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_k15.g1 MSMg01no443_k15.g1 CHROMAT_FILE:
MSMg01no443_k15.g1 PHD_FILE: MSMg01no443_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:20 2005
         (190 letters)



>mm_chr15_83393593_83394182
          Length = 590

 Score =  296 bits (153), Expect = 6e-85
 Identities = 181/195 (92%), Gaps = 10/195 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagctcactgtcatcctcctgtctcaggtgtgaaatataaacatgtgccacctctgtggc 60
           ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 201 gagctcactgtcatcctcctgtctc-ggtgtgaaatacaaacatgtgccacctctgtggc 259

                                                                       
Query: 61  attcgttgtctgcctgtctgcgatgcatctctcccctctgtgtccaggcccacgatgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 260 attcgttgtctgcctgtctgcgatgcatctctcccctctgtgtccaggcccacgatgagg 319

                                                                       
Query: 121 agatattttata-----ggggtgcctggttgagggcgggcctgggaaggcagggtgcctc 175
           ||| |    | |     |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaga----aaaaaagaggggtgcctggttgagggcgggcctgggaaggcagggtgcctc 375

                          
Query: 176 cgggtgcggcgcagg 190
           |||||||||||||||
Sbjct: 376 cgggtgcggcgcagg 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)