Query= MSMg01no444_e11.b1 MSMg01no444_e11.b1 CHROMAT_FILE:
MSMg01no444_e11.b1 PHD_FILE: MSMg01no444_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:08 2005
(493 letters)
>mm_chr15_89836346_89837236
Length = 891
Score = 857 bits (443), Expect = 0.0
Identities = 480/495 (96%), Gaps = 6/495 (1%)
Strand = Plus / Plus
Query: 1 acccattgtgactactcctgaaatattttaaagatacgtgtctcataataaataaaaaaa 60
|||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 201 acccattgtgactactactgaaatattttaaagatacgtgtctcaaaataaattaaaaaa 260
Query: 61 ataaaaaatttaaatgcatttgaaagtagataacctctccttttctgtttcaggatgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaaaatttaaatgcatttgaaagtagataacctctccttttctgtttcaggatgtat 320
Query: 121 gttttcttgtttataggattacctggttctttaagtaagaatgatataaaaaattataat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttcttgtttataggattacctggttctttaagtaagaatgatataaaaaattataag 380
Query: 181 aaaagacattaaaatggaagagtcctgattaaaaataatcataaaaagataatatat--a 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 aaaagacattaaaatggaagagtcctgattaaaaataatcataaaaagataatatatgca 440
Query: 239 tgcatgcatactcttttaccctcatatataatttgcatttattgctataatgttttgata 298
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 tgcatgcacac----ataccctcatatataatttgtatttattgctataatgttttgata 496
Query: 299 ataaataaatgtgtaactttaaaaataaaggataaatcaaatgacagagattgaacttta 358
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 497 ataaataaatgtgtaactttaaaaataaaggataaatcaaatgacaaagattgaacttta 556
Query: 359 aaattataagttaattttgaagtctgcttttctgtcatcagctacttagtgaattattgg 418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 557 aaattataagttaattttgaagtctgcttttctgtcatcagctacttaatgaattattgg 616
Query: 419 ttatattttgctgtaaggtcacaaagttaattatgacataaggttaaaaagttaattaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttatattttgctgtaaggtcacaaagttaattatgacataaggttaaaaagttaattaaa 676
Query: 479 aatttcttattacaa 493
|||||||||||||||
Sbjct: 677 aatttcttattacaa 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 891
Length adjustment: 10
Effective length of query: 483
Effective length of database: 881
Effective search space: 425523
Effective search space used: 425523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_e11.g1 MSMg01no444_e11.g1 CHROMAT_FILE:
MSMg01no444_e11.g1 PHD_FILE: MSMg01no444_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:08 2005
(512 letters)
>mm_chr15_89970375_89971286
Length = 912
Score = 891 bits (461), Expect = 0.0
Identities = 497/509 (97%)
Strand = Plus / Minus
Query: 3 taaggatttcaaagtaagattccacatgtgtcctaactgtaaataataccagttagggag 62
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 711 taaggatttcaaagtaagattccacatgtgtcccaactggaaataataccagttagggag 652
Query: 63 ttgctctttcagaacatatactgatcgataagcatagaagtcatgcctcccaatcaagtc 122
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 651 ttgctctttcggaacatatactgatcaataagcatagaagtcatgcctcccaatcaagtc 592
Query: 123 tgagtcatgcggtgaggcctaaatcagcaaggtgaacggcggtcagttatgtcaaagttg 182
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 591 tgagtcatgcggtgaggcctaaatcagcaaggtgaacggcagtcagttatgtcaaagttg 532
Query: 183 aaattctgtttcagaattgatcagggcatgaccagaactacatgccatctgaccacgtta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaattctgtttcagaattgatcagggcatgaccagaactacatgccatctgaccacgtta 472
Query: 243 tgattgattaaatccaagtagatcaagctgcagccccggatccagtccatcgaccaacct 302
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 471 ggattgattaaatccaagtaggtcaagctgcagccccggatccagtccaccgaccaacct 412
Query: 303 cagatctaagtaaccttccacttcctatgtgaatccagaaagtgttattccaggacctgt 362
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 411 cagatctaagtaaccttccacttcctatgtgaatccggaaagtgttattccaggacctgt 352
Query: 363 aacagcactgtgacatcagcaaagaccctgcactccctgagaagctggcctatttctcct 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aacagcactgtgacatcagcaaagaccctgcactccctgagaagctggcctatttctcca 292
Query: 423 ggtggtcttggagaatccgcttcctgcccagcataaagcaacctgctgtagcctcccacc 482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggtggtcttggagaatccgctttctgcccagcataaagcaacctgctgtagcctcccacc 232
Query: 483 catgggttcctatgtcattcgttatttgg 511
|||||||||||||| ||||||||||||||
Sbjct: 231 catgggttcctatgccattcgttatttgg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
