NTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTTGTCTATTCCATGGTTGTAAATGTACGGATAACAGAATTT
TACAGCTTGAATATGAAATGTAATGCTTACATGTTGAGTACTTTGTTCCC
AGATAGTGATATTTATATTAGTTTTAAAACATAAGATGACACTGCTTCCT
AGAGATTTACAAATGATCTGTGAAGAATCTATTATAAAATCTAAAAAGCT
GCTTGAAGCTACAATAGTTATTTCTTCAACACACCATTTCTGTTACTTCC
CTTTTCACCATTCTTAAATAAAGTCTTCATAGACTTCAAATCAGGGGACT
TCAAAACAGGTTGGACTTTGTTGCTTTTGATTCCATTGTCTGTTTATTTT
AACCACTTGTAGATACTATAGAATGCATAGTTATAAAATAATTATTTGAA
ACTAACTAGCTTATTTTATTCTTTTTCTTATACTTTAAAACACTACTTAC
TATGTGCCAAAAATTTTTCATTTACACTTGAATGTTCCTAAAAATGCGAC
TACTATTTAATTATATATGTTCTTAAAATTTTTTTTTCCATTATACCATC
ACTCATCTAATGGTTTATTTAACCCCTTCCATACCTATTAACCTTTGTCC
CACTATTTAAATTCTCTTTTCTTTCCCCCCTAATATTTCCCATGTTTTCG
CGCATCTTTCCCCCCTTTGTTTCGATAGGCTCCCCGTTTTTCCTCCTTNT
TCCTCCTCGCTCCGTCTACCTCTATCTTG

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGATTATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCCCCAAGGAACTCACACTATATGTACTCACTGATAA
GTGGATATTATCCCAAAACCTAGGATAACCCAGATATAAATACAATTTTC
TAAACACCTGGAATTCCGAAAAAAGAAGAGGAAAGGGGGACCTCTGCCCC
CCCTAAAATGGGGAAAAA

Query= MSMg01no444_p16.b1 MSMg01no444_p16.b1 CHROMAT_FILE:
MSMg01no444_p16.b1 PHD_FILE: MSMg01no444_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:02 2005
         (436 letters)



>mm_chr15_47134186_47135021
          Length = 836

 Score =  781 bits (404), Expect = 0.0
 Identities = 428/436 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttgtaaatgtacggataacagaattttacagcttgaatatgaaatgtaatgcttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggttgtaaatgtacggataacagaattttacagcttgaatatgaaatgtaatgcttaca 260

                                                                       
Query: 61  tgttgagtactttgttcccagatagtgatatttatattagttttaaaacataagatgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgagtactttgttcccagatagtgatatttatattagttttaaaacataagatgaca 320

                                                                       
Query: 121 ctgcttcctagagatttacaaatgatctgtgaagaatctattataaaatctaaaaagctg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ctgcttcctagagatttacaaatgatctgtgaagcatctattataaaatctaaaaagctg 380

                                                                       
Query: 181 cttgaagctacaatagttatttcttcaacacaccatttctgttacttcccttttcaccat 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgaagctacaatagttatttcctcaacacaccatttctgttacttcccttttcaccat 440

                                                                       
Query: 241 tcttaaataaagtcttcatagacttcaaatcaggggacttcaaaacaggttggactttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttaaataaagtcttcatagacttcaaatcaggggacttcaaaacaggttggactttgt 500

                                                                       
Query: 301 tgcttttgattccattgtctgtttattttaaccacttgtagatactatagaatgcatagt 360
           || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttttgtttccattatctgtttattttaaccacttgtagatactatagaatgcatagt 560

                                                                       
Query: 361 tataaaataattatttgaaactaactagcttattttattctttttcttatactttaaaac 420
           ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||
Sbjct: 561 tataaaataattatttgaacctagttagcttattttattctttttcttatactttaaaac 620

                           
Query: 421 actacttactatgtgc 436
           ||||||||||||||||
Sbjct: 621 actacttactatgtgc 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)