BAC Information

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BAC

Clone NameMSMg01-445J01
Chromosome15 (Build37)
Map Location 18,785,256 - 18,785,742
singlet/doubletsinglet
Overlap geneCdh10
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445J01.T7 (MSMg01no445_j01.b1)MSMg01-445J01.TJ (MSMg01no445_j01.g1)
ACCAG534466AG534467
length777741
length of high quality
(start - end)
174 (61 - 234)488 (66 - 553)
definitionCHROMAT_FILE: MSMg01no445_j01.b1 PHD_FILE: MSMg01no445_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:48 2005CHROMAT_FILE: MSMg01no445_j01.g1 PHD_FILE: MSMg01no445_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCCTCTAT
TTCCCGAGAGTTGGGGGCCTCATATCTGCTGGTGTATGCTGTCTGTTTGG
TGGTCCAGTGTTTGTTGGTCCTCCTACAGGATCACCCTTCTCACCTTCTT
TCAGCCTTTTCTAATTCATCAACAGAGGTCAGCTGCTTCTGTCCATTGGT
TTCGTGCAAATACCTGCATCTGATTCTTTCAGGCTGGTCTTGGTTTGAGN
TNNCTTTCAAAAAGGGACAGGTCTGAAAGATTCCCTTTTTCGGGGAGGGC
TCCCCTAACCCTTAAAAAAAATTTTTTTTTTCTTGGAAACCCCCCCCTGG
GATTGGGAACCCCTTTTTGGGCCCCTGGGTGGTGGGGACCCCTTTTTTTT
TTTCTCGAAGGGGCCCCCCCCCCCCATATTTAAATTACCCGCGCGGGAGA
ATTTTTTTCTCTCTNNCTNNNNNAATAAAGAATAGCNCTGGTGGGAGGGC
GGGGGGGTACAGGCGTAGCCNCAGATTGAGTCCTCTATAGAAAAAGAGAA
ATTTTTTAATAGAGACTAATTCTATTCTGACAAAGCCCCATTTTGCATTT
CCTTTTAAAAGAATGTTCTCCAAGAATCCCTCACTCCTTTCTCAAATATG
CTCGTNTCTATTATCCTTNTTCTCCNNNNNNNNNNAAAGAGGNTAAGNAG
AGAACAAGAGAGATACCCAAAAAAAAAGNCCNNCTNCTTCACCCNCNNCC
CTGAGACGCCCGCNCACCGACGAAGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAAGCAAGCACATCTCTCACTGATAAGTCCATCAA
ATATATTCAAAGATTTCTAATAAAATATTAATTATGTTGAGAAAATGTCA
CAGACAAGACACATACCATTCTATACCTGGAACACATCAGCAAGTTGAAA
TTATTTGCAGCTGAATATCAGTTGCTTGGCCAAAGAAATTAAATGTTTTT
TTCCAGGGGATTTTAGTGAATCTGGGTAAAACAGTTAGTGAATCTGGGTA
AAACAATATTATTATTTATTGTCTCTGTTAAATAGAAGGCCAAATGTTCC
TTGTTGTTGCCTGATGCCCCAAATCAGGTTTTCTTCTCCCCAGTATACAA
TCGTGCCTTTTACAGTTGTAATATTCATCACTCTTGTAAAAACAGCCATT
GGAAACTTAGGTTAGGTCCTCACATGTGGATGACTAAAACCTCTGGGATA
GAGACTACAACCTAGGTGTTAGTGAGTACTGAGGGAAATGCCAGTCTGAA
CCCATACGGTAGAAGGGGAATGAGATTACTGGGCACCAAGGTAGATGGAT
TTCAGTGCTCTTTTCCCTCCAACAAAACTGATAAAGTAAGAGTCCTATTG
CAAAAATATTAGTTTGAAATCTTCTGGTGGCGATGAAATTTTACCGTTTT
ACTGTAAGAACTCTTCTTTTATTTTTCCCATATGCTCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_j01.g1 MSMg01no445_j01.g1 CHROMAT_FILE:
MSMg01no445_j01.g1 PHD_FILE: MSMg01no445_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:48 2005
         (488 letters)



>mm_chr15_18785056_18785943
          Length = 888

 Score =  888 bits (459), Expect = 0.0
 Identities = 480/487 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcaagcacatctctcactgataagtccatcaaatatattcaaagatttctaataaaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcaagcacaactctcactgataagtccatcaaatatattcaaagatttctaataaaa 260

                                                                       
Query: 61  tattaattatgttgagaaaatgtcacagacaagacacataccattctatacctggaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattaattatgttgagaaaatgtcacagacaagacacataccattctatacctggaacac 320

                                                                       
Query: 121 atcagcaagttgaaattatttgcagctgaatatcagttgcttggccaaagaaattaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcagcaagttgaaattatttgcagctgaatatcagttgcttggccaaagaaattaaatg 380

                                                                       
Query: 181 tttttttccaggggattttagtgaatctgggtaaaacagttagtgaatctgggtaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttttccaggggattttagtgaatctgggtaaaacagttagtgaatctgggtaaaaca 440

                                                                       
Query: 241 atattattatttattgtctctgttaaatagaaggccaaatgttccttgttgttgcctgat 300
           ||| ||  |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 atagtaaaatttattgtctctgttaaatagaaggccaaatgttccttgttgttgcccgat 500

                                                                       
Query: 301 gccccaaatcaggttttcttctccccagtatacaatcgtgccttttacagttgtaatatt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 gccccaaatcaggttttcttctccccagtatacaatcgtgccttttacagctgtaatatt 560

                                                                       
Query: 361 catcactcttgtaaaaacagccattggaaacttaggttaggtcctcacatgtggatgact 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 catcactcttgtaaaaacagccattggaaacttaggttatgtcctcacatgtggatgact 620

                                                                       
Query: 421 aaaacctctgggatagagactacaacctaggtgttagtgagtactgagggaaatgccagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaacctctgggatagagactacaacctaggtgttagtgagtactgagggaaatgccagt 680

                  
Query: 481 ctgaacc 487
           |||||||
Sbjct: 681 ctgaacc 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)