Query= MSMg01no445_l09.b1 MSMg01no445_l09.b1 CHROMAT_FILE:
MSMg01no445_l09.b1 PHD_FILE: MSMg01no445_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:01 2005
(224 letters)
>mm_chr15_99223852_99224475
Length = 624
Score = 418 bits (216), Expect = e-121
Identities = 222/224 (99%)
Strand = Plus / Plus
Query: 1 agcccagggcttagcctggctccccagccccacggagcagccccactctgatctgattgg 60
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 agccccgggcttagcctggctccccaggcccacggagcagccccactctgatctgattgg 260
Query: 61 ttgcctctggacaggtgaggtggccttgattgcttcgtcctgaaccctgggtgagttcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcctctggacaggtgaggtggccttgattgcttcgtcctgaaccctgggtgagttcca 320
Query: 121 gagtctgccccggaagggcggcgatgggtactgtttttcttggactgactgataagtagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtctgccccggaagggcggcgatgggtactgtttttcttggactgactgataagtagg 380
Query: 181 ctttggcttgcctgccttcgtttctttccttttcttttttttta 224
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttggcttgcctgccttcgtttctttccttttcttttttttta 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space: 132225
Effective search space used: 132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no445_l09.g1 MSMg01no445_l09.g1 CHROMAT_FILE:
MSMg01no445_l09.g1 PHD_FILE: MSMg01no445_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:01 2005
(486 letters)
>mm_chr15_99369189_99370075
Length = 887
Score = 690 bits (357), Expect = 0.0
Identities = 385/395 (97%), Gaps = 4/395 (1%)
Strand = Plus / Minus
Query: 96 ctattttcttctttttagttttctacatttttttttaatgtaccctccagccgggcagtg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ctattttcttctttttagttttctacatttttttttaatgtaccctccagccgggcagtg 828
Query: 156 gtggtgcacgcctttaatcccagcagattgggaggcagaggcaggcagatatctgagttc 215
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gtggtgcatgcctttaatcccagcagattgggaggcagaggcaggcagatatctgagttc 768
Query: 216 aaggccagcctggtccacaaagtcttttctaggacagccagggctacacagagaaaccct 275
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 767 aaggccagcctggtccacaaagtcagttccaggacagccagggctacacagagaaaccct 708
Query: 276 gtctcagaaaaaacaaacaacaacaa-aa-aaaaaacc--caacaaaaaattatgagcat 331
|||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||
Sbjct: 707 gtctcagaaaaaacaaacaacaacaacaacaaaaaaacaacaacaaaaaattatgagcat 648
Query: 332 gtattcattacttattaattggaaaatgtaattcatattcatatttggttaaattctgcc 391
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 647 gtattcattacttattaattggaaaatgtaattcatattcatatttggttcaattctgcc 588
Query: 392 tcgccttcaaagaccataaaagtgctcagtttggaggacttcccgggtctagtgtgctcc 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tcgccttcaaagaccataaaagtgctcagtttggaggacttcccgggtctagtgtgctcc 528
Query: 452 gtcctctgtcctgccgtggctcactctcaactgcc 486
|||||||||||||||||||||||||||||||||||
Sbjct: 527 gtcctctgtcctgccgtggctcactctcaactgcc 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space: 417452
Effective search space used: 417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
