BAC Information

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BAC

Clone NameMSMg01-446I13
Chromosome15 (Build37)
Map Location 52,156,303 - 52,156,434
singlet/doubletsinglet
Overlap geneSlc30a8
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219
Downstream geneLOC100039748, Thrap6, LOC100039745, Ext1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446I13.T7 (MSMg01no446_i13.b1)MSMg01-446I13.TJ (MSMg01no446_i13.g1)
ACCAG535205AG535206
length773744
length of high quality
(start - end)
133 (173 - 305)173 (312 - 484)
definitionCHROMAT_FILE: MSMg01no446_i13.b1 PHD_FILE: MSMg01no446_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:05 2005CHROMAT_FILE: MSMg01no446_i13.g1 PHD_FILE: MSMg01no446_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTAAACGACTCACAATTGCCGAGCGTGCGCGGAANNCCNANCCTTT
ACAGNACCTCTGAAAACNGCANNANGGAAGGANNGAGCCNNGGNGGGNAG
CTTGGACCCCGCTNNCAGNGANGGACNGAGANNNAGCAGAAANGNNACAC
ATACAGGAGGGGNNNCATTCNNTGTCAGTTTGCTTGGAAGATGAGTGCTA
AACTTTGCAATATGTTGTAATATGTGTGTATATATACTTTTTTTTTATAC
GATATCAAATGATTTCAGTCCCTGCATGGATAAGTATATATTCAGATACA
GTATTTTTTTTATTGGCCANNAGAAAANNANNCAGAANNAAANAATCTTT
CTATTCCCCCCAAAGGACAGGTGGGGTGGGGGTAGGGGCATCCCGGTGGA
GACAGAGTGTTTTGAGAAGGAGGTGTGGTTTTTGCCCCACTCCCTCCCCT
TATTTCTTGCTCGCTTTTCCCCCCCTCCTTCCCCCACTTAATTCCACTCG
CCTCACGTCCTCTACAATCTTCCTTAATCCTTCCCCCTTTTCTCTCCTCT
ACACGCCCCTCCGCCCCTATTCTTCCGCTCCCCTCCTCCTTCTCCCCTCT
TTTCTTCTCCCCCCTTCCCTCCTATCTCTTCTTTCCCTGTTCAACCCTCT
TTTTTTTTTCTTTTTCACCCCCCGCACACCCAACGACCCCATCCTGCTAT
CGTATCCCGCCCCCTTTATCCCGCCTCTCCTTCTTAATCAATTTTCTATC
TTTCCCTTCTCTCCCTCTCTTTT
AGGCCTGGAGGNCGCCTGGTTGCGCACCGGAGGNNGAACTATAGAAGGTT
ACGAGGAGCTCTGCACTAAACCCATCTGGTCCTGGACTTGTTTGTTTTTT
TGATAAGCCTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTA
GACCAGGCTGGCCATGAACTCAGCAATCTGCCTGCCTCTGCCTCCCAGGT
GCTGGGATTAAAGTCGTGTGCCACCACTGCCCTGTCTCTGGGCTGTTTTT
GATTGAGAGACTTTTAATGACTGAGTCTATTTCCTTAGGGGTTATGGGAC
TGGNTTGANTTATTATATGATCTTAATTTAACTTAAAGTATTTGATATCT
GTCTAGAAAATTGTCCATTTCATCCAGATAGTCATCTAGTTTTGTTGAAT
ATAGGCTTTTGTAGTAGGATTTGATGAGTTTTCAAAATTTCCTCAGTTTC
TGTTGTTGTATCTCCCTTTTCATTTCTGATTTTGCTAATTTGGATACTGT
CTCTGTGCCCTCTGGCTAGTCTGGCTAAGGGTTTATCTATTTTGCTGATT
CTCTTAAAGAACCATCTCCCGTTTTGGCCGATTCTTTGTATACATCCTTT
GTTTCCACTTGGCTGATTTCAGCAACGACCCGATTATTTTTTTTTTTTTA
CTCCTTTTCGCGGTACTTGCCTACTCCCTGCTCCAGACCTTCTATTGTGT
CTTTTACCAGGCACTCCATTCTCCCCCTCTCCTTTTCTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_i13.b1 MSMg01no446_i13.b1 CHROMAT_FILE:
MSMg01no446_i13.b1 PHD_FILE: MSMg01no446_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:05 2005
         (133 letters)



>mm_chr15_52156103_52156635
          Length = 533

 Score =  219 bits (113), Expect = 7e-62
 Identities = 127/137 (92%), Gaps = 10/137 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcagtttgcttggaagatgagtgctaaactttgcaatatgttgtaatatgtgtgtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcagtttgcttggaagatgagtgctaaactttgcaatatgttgtaatatgtgtgtata 260

                                                                       
Query: 61  tatac-----tttttttttatacgatatcaaatgatttcagtccctgcatggataagtat 115
           |||||     ||||     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatacaagcatttt-----atacgatatcaaatgatttcagtccctgcatggataagtat 315

                            
Query: 116 atattcagatacagtat 132
           |||||||||||||||||
Sbjct: 316 atattcagatacagtat 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 533
Length adjustment: 8
Effective length of query: 125
Effective length of database: 525
Effective search space:    65625
Effective search space used:    65625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)