BAC Information

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BAC

Clone NameMSMg01-446L08
Chromosome15 (Build37)
Map Location 3,911,231 - 3,911,708
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674207, LOC666163, EG666167, Sepp1, LOC100039139, Ghr, LOC223278
Downstream geneFbxo4, AW549877, LOC100039196, Oxct1, Plcxd3, C6, LOC100039214, 4930455B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446L08.T7 (MSMg01no446_l08.b1)MSMg01-446L08.TJ (MSMg01no446_l08.g1)
ACCAG535339AG535340
length757742
length of high quality
(start - end)
475 (39 - 513)245 (86 - 330)
definitionCHROMAT_FILE: MSMg01no446_l08.b1 PHD_FILE: MSMg01no446_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:19 2005CHROMAT_FILE: MSMg01no446_l08.g1 PHD_FILE: MSMg01no446_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTGC
TAAGATGACCGGGAGGGGGAAGCAAAGCAAAACAAAACAAAACACCCAGG
AACTTCTCAAAGGCTTAAGCTTGGGGAATCCTCCAAAAAGGCACAAAGCA
GAAAGCAGAAACACACAGGCAACAAAGGTCTCTCTAGGTGAAGGAATCAA
AGCAATCAGTTCCTTGACTGCTGGATGCTAGGGACTTGCATAAAAGGAAA
GAAGAGACATAAGCCAATATGAGCCACACGTAAACAAACAGGAGTCTCAG
CTCCAAATGAGCTGGGTCTTTTTAGAAACTGGAAAGATGACCCTTCTCTG
CAGCTGGCTCATGAAAAGGGGACCATGGGTGAGCTTGCTTCAAAAAGAAA
ATACAGAAATTACGTAGTTCGAAGTTTAATATTCTTTTTTGAAGTGCCCT
TTAAAATGAGGCACATGAAATAGATGGGAAATGTAGCCTCAAATAAAAGG
TGGACAGGATGGCAGGTAGAAATACTATGGCAATAAAAATTATCAGAAAA
ATGCTAAGAGCCCTATGAAACATACTAAATACCACAATATTACTGAGGTT
CTTAAAAGCTACCAGATGCGGTATGATAATGTAGGACACAATGTTTGCAC
AATAACAGGGGGGCGTTAAAAAAACACCCCTGTTTTTCCATAAAACCGCG
CCTTATCTTTTTCTTTGTATCACCGAATCTAACCCCCCTCTCTTCTTGTC
TTACTTN
TTCCGACCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAATTCAAGAGC
AAAAGCATCCCTCAAATAATCCAAGCAAAAGTAGGCAGCATGGCTGGGTA
TGGCATCACTTCTTTAATCCTAGCACTCAGGAAGCAGAGGCAGGTGGATT
GATGAGTTCAAGGCCAGACTAGTCTACAGAGCATGTTTCAGGACAGCCAG
GGCTACACAGAGAAACCCTGTCTCAAAGCAAGCAAGCAAACAAACAAACA
CACAAACAAGTGGGTAGTATATCTAAATAAGACATGTTAGGGAGACATAC
CAAAGACCATATGAGAATTCGGTTTATGATAATTCTCAACATCCTTAATC
ATTAAAGAAATGACAATCAAAGTCACAATGAAATTCTGGCCCAATCTAGT
TAAATTAGCTACTGTCAGAGAGACAAAGCTAACTGCTCTTGTTCTCTCTG
CTGAGACCTGTGTCATAGCCCAAAGGAAGAAGTGTTGGTTTGGGTCTAAC
AGGGGACACTTGTACGTAAACACCGGCGTATGCACTGTGAAATTCTCCGT
TAGCTCCCCTCTTTAACCCATCAGCCCACCTTTTTTTGAACTTGCATCCT
TCCCTACATACGTATATCACTTCCGCCCTGCCCTTCATTTTTTACCCCTA
CTCTCCCGCTCCCCATTGACCCTTTCCTATCATCTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_l08.b1 MSMg01no446_l08.b1 CHROMAT_FILE:
MSMg01no446_l08.b1 PHD_FILE: MSMg01no446_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:19 2005
         (475 letters)



>mm_chr15_3911034_3911908
          Length = 875

 Score =  824 bits (426), Expect = 0.0
 Identities = 463/482 (96%), Gaps = 13/482 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattctgctaagatgaccgggagggggaagcaaag-----caaaacaaaacaaaacac 57
           ||||||||||||||| ||  |||||||||||||||||     ||||||||||||||||||
Sbjct: 198 ggaattctgctaagaggaaggggagggggaagcaaagcaaaacaaaacaaaacaaaacac 257

                                                                       
Query: 58  ccaggaacttctcaaaggcttaagcttggggaatcctccaaaaaggcacaaagcagaaag 117
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccaggaacttctcaaaggcttaggcttggggaatcctccaaaaaggcacaaagcagaaag 317

                                                                       
Query: 118 cagaaacacacaggcaacaaaggtctctctaggtgaaggaatcaaagcaatcagttcctt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagaaacacacaggcaacaaaggtctctctaggtgaaggaatcaaagcaatcagttcctt 377

                                                                       
Query: 178 gactgctggatgctagggacttgcataaaaggaaagaagagacataagccaatatgagcc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gactgctggatgctagggacttgcataaaaggaaagaagagacataagccaatatgagcc 437

                                                                       
Query: 238 acacgtaaacaaacaggagtctcagctccaaatgagctggg----tctttttagaaactg 293
           |||||||||||||||| ||||||||||||||||||||||||    ||     ||||||||
Sbjct: 438 acacgtaaacaaacagaagtctcagctccaaatgagctgggcccatca----agaaactg 493

                                                                       
Query: 294 gaaagatgacccttctctgcagctggctcatgaaaaggggaccatgggtgagcttgcttc 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaaagatgacccttctctgcagctggctcatgaaaaggggaccatgggtgagcttgcttc 553

                                                                       
Query: 354 aaaaagaaaatacagaaattacgtagttcgaagtttaatattcttttttgaagtgccctt 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaaaagaaaatacagaaattacgtagttcgaagtttaatattcttttttgaagtgccctt 613

                                                                       
Query: 414 taaaatgaggcacatgaaatagatgggaaatgtagcctcaaataaaaggtggacaggatg 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 taaaatgaggcacatgaaatagatgggaaatgtagcctcaaataaaaggtggacaggatg 673

             
Query: 474 gc 475
           ||
Sbjct: 674 gc 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)