BAC Information

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BAC

Clone NameMSMg01-447B18
Chromosome15 (Build37)
Map Location 43,022,822 - 43,023,263
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039268, LOC100039197, Angpt1, Rspo2
Downstream geneLOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447B18.T7 (MSMg01no447_b18.b1)MSMg01-447B18.TJ (MSMg01no447_b18.g1)
ACCAG535645AG535646
length752771
length of high quality
(start - end)
558 (50 - 607)442 (77 - 518)
definitionCHROMAT_FILE: MSMg01no447_b18.b1 PHD_FILE: MSMg01no447_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:50 2005CHROMAT_FILE: MSMg01no447_b18.g1 PHD_FILE: MSMg01no447_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGATCTTTCCAAGACTTTTATCGTGAATGGGTATTGGATT
TTGTCAAATGCTTTCTCAGCATCTAACGAGATGATCATGTGATTTTTGTC
TTTGAATTTGTTTATATAGTGGATTAAGTTGATGGATTTCCGTATATTAT
AATATCCCTGCATCCCTGGAATGAAGCCTGCTTGATCATAATGGATGATT
GTTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGTATTTT
TACATCGATATTCATAAGGGAAATTCTTCTGAAGTTCTACTTCTCTACCT
TTGTTGGGTCTTTTTGTGGTTTAGATATCAGAGTAATTGTGGCTTCATAG
AATGAATTGGGTAGAGTACCTTATGTTTCTATTTTGTGGAATAATTTGAG
GAGAATTAGGTCTTCTTTGAAGGACTGATAGAACTCTGCACTAAACCCAT
CTGGTCCTGGGCTTTTTTTTTTTTTTTTTTTTGGTTGGGAGACTATTATT
AATGACAATTTCTATTTCTTTAGGGGATATGGGTCTGTTTAGGTCATTAT
TCTGATCCTGAATTAACTTTGGTACTTTATATCTGTCTAGAAATTTGTCC
ATGTCACCCAAGTTTTCCCGTTTTGTTGAGAATAACCTTTTGTCATAAGA
TCTGATTATGTTTTGGATTTCTTCCGGTCCGTTGAAATGCCTCCCCTTTC
TT
NNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGCGCGTGTTATTGGCAAAGTG
TTTATGCTGGAAAGGGAAAAAGAGCTAGACTTGAAAAATACAACAGGGAT
TAAGTACCCATGAGAAAACAAGAGGCATTGTTTCAGTAGCATGAACATAA
GTCAGGGACAGATTTGTCTGATGTATTCAGACAAAAGCAGGGCTGATACT
GAGCTTGTGAAGTGAATAAATGGAGAAGAAACACTGACAAGAAGACTTTG
GATATGACCTGGGACAAGTTAGAGACCCAGTGTTGGTTCTGAAGTGAGGA
GATACGTATACAGAACTGGCAGTTTAAGAGAGAATAGCCTGGTCATGGCC
TACATTTGAATGGAAAGAGATTGGATCTAAATTTGCACACAAAGTCACTG
AATGATGCAATGCCTGCACTGGAGTGATTACAGTTGTTGCCTCACTGAAG
GTCTGAGATATCTAACAGTTTTTGGATTAATGGTTCACATCTGGGAGGTA
TCTAAAGTATGACTCTGATTCTTCTCCACCATGTTCTATCTGTTCTTAAG
ACTCTACCACGTCCTCAGAGCAATATTGGTGCTGGTTTTCCGAAAATTTT
ATATGTTGGGATCTGGCAACTGAACTGGTTGGAAAAAAAAACAAATAAAA
TTCTTTCTGAAACGGGCCTTTTTTGTCCCACCGGTTTTAAATAAATATTG
GAGGTTTCCCTCCTTGACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_b18.g1 MSMg01no447_b18.g1 CHROMAT_FILE:
MSMg01no447_b18.g1 PHD_FILE: MSMg01no447_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:51 2005
         (442 letters)



>mm_chr15_43022622_43023463
          Length = 842

 Score =  832 bits (430), Expect = 0.0
 Identities = 439/442 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgcgtgttattggcaaagtgtttatgctggaaagggaaaaagagctagacttgaaa 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggcgcatgttattggcaaagtgtttatgctggaaagggaaaaagagctagacttgaaa 260

                                                                       
Query: 61  aatacaacagggattaagtacccatgagaaaacaagaggcattgtttcagtagcatgaac 120
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 261 aatacaacagggattaagtacctatgagaaaacaagaggcattgtttcagtaacatgaac 320

                                                                       
Query: 121 ataagtcagggacagatttgtctgatgtattcagacaaaagcagggctgatactgagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataagtcagggacagatttgtctgatgtattcagacaaaagcagggctgatactgagctt 380

                                                                       
Query: 181 gtgaagtgaataaatggagaagaaacactgacaagaagactttggatatgacctgggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaagtgaataaatggagaagaaacactgacaagaagactttggatatgacctgggaca 440

                                                                       
Query: 241 agttagagacccagtgttggttctgaagtgaggagatacgtatacagaactggcagttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttagagacccagtgttggttctgaagtgaggagatacgtatacagaactggcagttta 500

                                                                       
Query: 301 agagagaatagcctggtcatggcctacatttgaatggaaagagattggatctaaatttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagagaatagcctggtcatggcctacatttgaatggaaagagattggatctaaatttgc 560

                                                                       
Query: 361 acacaaagtcactgaatgatgcaatgcctgcactggagtgattacagttgttgcctcact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacaaagtcactgaatgatgcaatgcctgcactggagtgattacagttgttgcctcact 620

                                 
Query: 421 gaaggtctgagatatctaacag 442
           ||||||||||||||||||||||
Sbjct: 621 gaaggtctgagatatctaacag 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)