BAC Information

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BAC

Clone NameMSMg01-447H17
Chromosome15 (Build37)
Map Location 53,960,124 - 53,960,582
singlet/doubletsinglet
Overlap genenone
Upstream geneExt1, Samd12, EG665097, EG621631
Downstream geneTnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447H17.T7 (MSMg01no447_h17.b1)MSMg01-447H17.TJ (MSMg01no447_h17.g1)
ACCAG535925AG535926
length784787
length of high quality
(start - end)		462 (51 - 512)359 (80 - 438)
definitionCHROMAT_FILE: MSMg01no447_h17.b1 PHD_FILE: MSMg01no447_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:24 2005CHROMAT_FILE: MSMg01no447_h17.g1 PHD_FILE: MSMg01no447_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAGCCCTTGCCCTAGTCAAGGAATAGGGATCATGTTAATG
AAACAATTCACAGACAGGCATTCCCAACACCTGTGAGAACGTGATCATCT
TCAGTGCCAAAGCTATCTTCTAAAAGAGGCTATTCACTTAGTGTGATTCT
ATTAAAGAATAATCCTAAACTAGATGTACCATCTCTAAAGTTTATGTGTA
GTGAGTATTGTGGCAGTCACTGTACCTCCATGCCCTGGCAGAGTATATAT
AATGAATACTGATGTTCAGTCCTTTTGCTAAATTAAAGAAACTATTATGA
ACCTATAGTTTTAATTTTTTAAAAATGAAAGTCTATGCACACAATACTTG
AAAATTATGCATCATGATGCCTTAAAAATTAATCAAAACCTTGTCACTGG
AGGACCCAGATACAGGGAGAATGACTCTCTGAGCAAGGAATATTACAAGG
TCAAATTTCTGCTGTGGATACGATGTTATTTTTCAAATGACTCTTTCTAG
TTCAAGATTCTTCANGGGAAAATATGACTATTCCTAGTGAAAATAGTTGC
CAGAAGGAACGGTGGCCCCCGCACAGGAAGCCTTTGCATTGCCTACTTTT
AAGAATTCCCCCCAGGGATCCAAAGGAAAAATACCTTTGAGGGAGAGAAA
AATTCCTCCCGGGGTGATTCACCCAAAAAGGCCCGGGAGTAAAAGGGTAT
TATATTTTTGGGCCCCCCGGAGGGGCCCTCTTTG

NACCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAAGAGGATGGGGTATTA
CTTCTGTGATTAGGGGGCAAGACTATTTTTGTTATTGTTATTCTTGTTAT
TCTTGTCTTGACTTTGAAGTAGCAGGAAACTACAGTGAAGACAATCATAC
AGAAAAGAATTGAGGGCAACTGGGAGCTAGCAACCAACCAGGAATGAAGC
TCTCAGGACAAATATTTTTGAGGAAGTGAAAAAAAATTTTTTTACAATAA
TTATGTGGGCTTCAGAATGAATCTTTTGCATTCCTGACTTCAGATGAGAC
TTTAGCTTTGGATCCTACCTTGATTTCAGTCTTCTAGTAAATCTTGAAGC
AGAAAACTTTAGATAAACTTGCCCAGATTGGTGATCCATAGAAGCCACAG
TAGAATAAAAGTACTCAGGCCACAATATGATAAAAACCACACCCTTTCAA
CAAAAGGGTGGTGCTTTGTTATTTGGGAATACATGATTAACCTGGCCAAG
AGCAAAATATGGAAAAACTTTTGTCCTGTTTATGTGTAACCCAGGAGAAA
ACACCTTTGGGCCTTAACACCTCGTATCAAAATTATTCATTTGGGACAAT
AAGGTTTATTTATTTCATGCTTCCTTCTCTCTGGCACCTTTGCGCGCCCT
TTTCTCCTACTTCATGTATTGATTCGCTGGGGATTTATTCATAAACTTTG
CTCTGCTCCTCTTCCCTTACCTTCTTATATAACTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_h17.b1 MSMg01no447_h17.b1 CHROMAT_FILE:
MSMg01no447_h17.b1 PHD_FILE: MSMg01no447_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:24 2005
         (462 letters)



>mm_chr15_53959920_53960782
          Length = 863

 Score =  841 bits (435), Expect = 0.0
 Identities = 453/459 (98%), Gaps = 1/459 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagcccttgccctagtcaaggaatagggatcatgttaatgaaacaattcacaga 64
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagcccctgcgctagtcaaggaatagggatcatgttaatgaaacaattcacaga 264

                                                                       
Query: 65  caggcattcccaacacctgtgagaacgtgatcatcttcagtgccaaagctatcttctaaa 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 caggcattcccaacacctgtgagaacgtgaccatcttcagtgccaaagctatcttctaaa 324

                                                                       
Query: 125 agaggctattcacttagtgtgattctattaaagaataatcctaaactagatgtaccatct 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaggctattcatttagtgtgattctattaaagaataatcctaaactagatgtaccatct 384

                                                                       
Query: 185 ctaaagtttatgtgtagtgagtattgtggcagtcactgtacctccatgccctggcagagt 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaaaggttatgtgtagtgagtattgtggcagtcactgtacctccatgccctggcagagt 444

                                                                       
Query: 245 atatataatgaatactgatgttcagtccttttgctaaattaaagaaactattatgaacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatataatgaatactgatgttcagtccttttgctaaattaaagaaactattatgaacct 504

                                                                       
Query: 305 atagttttaattttttaaaaa-tgaaagtctatgcacacaatacttgaaaattatgcatc 363
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atagttttaattttttaaaaaatgaaagtctatgcacacaatacttgaaaattatgcatc 564

                                                                       
Query: 364 atgatgccttaaaaattaatcaaaaccttgtcactggaggacccagatacagggagaatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgatgccttaaaaattaatcaaaaccttgtcactggaggacccagatacagggagaatg 624

                                                  
Query: 424 actctctgagcaaggaatattacaaggtcaaatttctgc 462
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actctctgagcaaggaatattacaaggtcaaatttctgc 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space:   385556
Effective search space used:   385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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