BAC Information

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BAC

Clone NameMSMg01-447K10
Chromosome15 (Build37)
Map Location 9,379,841 - 9,380,411
singlet/doubletsinglet
Overlap geneCapsl
Upstream geneNipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094
Downstream geneIl7r, C230086A09Rik, Prlr, Agxt2, 4930461P20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447K10.T7 (MSMg01no447_k10.b1)MSMg01-447K10.TJ (MSMg01no447_k10.g1)
ACCAG536053AG536054
length759796
length of high quality
(start - end)
574 (46 - 619)291 (78 - 368)
definitionCHROMAT_FILE: MSMg01no447_k10.b1 PHD_FILE: MSMg01no447_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:37 2005CHROMAT_FILE: MSMg01no447_k10.g1 PHD_FILE: MSMg01no447_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTTTTCTTCTCAGCTTCCTTCTTCTAAATGGACTCTAGATTGTG
TTAACTGGACACAAAACTAGCCAGCACAATCATCATTATAAAATATCTAC
TTCATAACCTCATTTTATTTTTATTATTTTTTAAATTCATTCAACTTGGC
TGAGGACTCCTAATGCAAGGACAGGGAGTAATGTCTAAGGAGTACATAGG
GCTTATAGCACAATGTGTAAGGAGTCACTCCATTTTCAAGACCACAAAAA
TCATCCCTACATTTGTCTACCACTATGAAGAGAAATAATGAGTATCTATC
TCTTTAACTCTTGTGTCATGCACTTCCCTTGTCTCACCTTGGTCTTCATC
CTGCACTCAACATGCTTATTTGAATATCTAGCCTGTGCTACTCAGTAACA
ATGTAGGAAACACTCAGTAACCTTTGCATGCTTAGGGAAAGTTTCAACTC
TGCAGTTTGAAGTACAACTGACTTTGTTGACACTGGAAACTGATTAGCCA
CCACTCCATGTCCCTCTTCTTTTCATATAATAGGGTAGAGACATGTGCTC
ATATCTACAACACCTTAGAACACTAATATCATAGAGCTGTTTCACCAGTG
TCCACAACTGCCTGACTCCAAGGTAATGTCGCACGATTTGTATTGCTTGT
TTAATCCGATGATGGCCAGGTCTTCTGAAGTTTGCACCCTAAGAATTCTT
GTTTGACTA
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGATACAGGGAAACACACACACA
GAGACACACAGAGACACAGAAAGAGACAGAGACAGAGACAGATAGAGACA
GACACAGAGAGAGAGACAGAGAGAGAGAGACAGAGAGAGATAGAAATAGA
CACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTCACAA
TCACCATGTGAAGTGTCATCAGCCTTCTGTTTCTCTTCTGTGTTGAAAAA
TATCAATAATTGAATCAGGGATAAGGGTATAGAGAGGGCCATGTGTACCC
TCTGGATATCATTCCACTTGACTGTTTCTGCTACACTTTGCTGATAGGAC
GAGGTATTGCTCCGTTCGCATTGTTCTGTTTCTATCGCTTTTCATTCCCA
GACCTTTCTCTCTCTGATCTTTCTACTTCTCTTTGTACCCCTCTGTCCTT
TGTGGCTTTCCCTGTATATTCTTTTCCGTTTGTCCTGTCTCTCCTTAATT
TTTCCTTCTTTTCCTTTTCCTTCCTGATTTACCGTTCGCTCTGCTCCTCT
TTTTCTCTTCTCTTGTGTCCTTTTTTTTTCCTATTTGCTTCTTTTCGGTT
GCTCCTTCCATTCCTTTCCGCCTCCCCTCTTGTTTCCTACGCTTTACTGT
CGCTCTTTTTCATTCTTCCTTCTCCTTCCCCTTCCTTTTCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_k10.b1 MSMg01no447_k10.b1 CHROMAT_FILE:
MSMg01no447_k10.b1 PHD_FILE: MSMg01no447_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:37 2005
         (574 letters)



>mm_chr15_9379499_9380472
          Length = 974

 Score =  982 bits (508), Expect = 0.0
 Identities = 556/572 (97%), Gaps = 2/572 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcattttttcttctcagcttccttcttctaaatggactctagattgtgttaactgg 63
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 gaattcattttttcaactgagcttccttcttctaaatggactctagattgtgttaactgg 854

                                                                       
Query: 64  acacaaaactagccagcacaatcatcattataaaatatctacttcataacctcattttat 123
           |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 853 acacaaaactagccagcataatcatcattataaaatatctacttcataacttcattttat 794

                                                                       
Query: 124 ttttattattttttaaattcattcaacttggctgaggactcctaatgcaaggacagggag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttttattattttttaaattcattcaacttggctgaggactcctaatgcaaggacagggag 734

                                                                       
Query: 184 taatgtctaaggagtacataggg-cttatagcacaatgtgtaaggagtcactccattttc 242
           ||||||||||||||||||||||| | || ||||||||||||||||| |||||||||||||
Sbjct: 733 taatgtctaaggagtacatagggtc-tagagcacaatgtgtaaggaatcactccattttc 675

                                                                       
Query: 243 aagaccacaaaaatcatccctacatttgtctaccactatgaagagaaataatgagtatct 302
           |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 674 aagaccacaaaaatcaaccctacatttgtctaccactaagaagagagataatgagtatct 615

                                                                       
Query: 303 atctctttaactcttgtgtcatgcacttcccttgtctcaccttggtcttcatcctgcact 362
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atctctttaactcttgtgccatgcacttcccttgtctcaccttggtcttcatcctgcact 555

                                                                       
Query: 363 caacatgcttatttgaatatctagcctgtgctactcagtaacaatgtaggaaacactcag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 caacatgcttatttgaatatctagcctgtgctactcagtaacaatgtaggaaacactcag 495

                                                                       
Query: 423 taacctttgcatgcttagggaaagtttcaactctgcagtttgaagtacaactgactttgt 482
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgacctttgcatgcttagggaaagtttcaactctgcagtttgaagtacaactgactttgt 435

                                                                       
Query: 483 tgacactggaaactgattagccaccactccatgtccctcttcttttcatataatagggta 542
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 434 tgacactggaaactgattagccaccactccatgtccctcttcctttcatataatagggta 375

                                           
Query: 543 gagacatgtgctcatatctacaacaccttaga 574
           |||||||| |||||||||||||||||||||||
Sbjct: 374 gagacatgggctcatatctacaacaccttaga 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)