BAC Information

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BAC

Clone NameMSMg01-448F03
Chromosome15 (Build37)
Map Location 29,313,744 - 29,314,344
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448F03.T7 (MSMg01no448_f03.b1)MSMg01-448F03.TJ (MSMg01no448_f03.g1)
ACCAG536563AG536564
length724744
length of high quality
(start - end)
603 (47 - 649)510 (82 - 591)
definitionCHROMAT_FILE: MSMg01no448_f03.b1 PHD_FILE: MSMg01no448_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:33 2005CHROMAT_FILE: MSMg01no448_f03.g1 PHD_FILE: MSMg01no448_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGC
GGAATTCCTGTTTCCTCTTCTGGATTGTAACCTATAAGTGAAATAAGTTA
TTTCATTCTATGTTACTTTGGTCATGACATTTCATCCCAGAAATAAGAAA
CCAAACTAGGACAATGCATGTGTAGTTTTTCATTATTTCATATTCACTTA
GTCTTGGACTCAAGCAAAACTTTTATCTTTTACACCTATTATATTTTCTC
ACATACAAAAATATGACTGCTAAGCCCTAAACTTTTCTTGTCACTGAGAC
CTCACGCTAACATCAACATAATACAAATAAATTTTAAAAGTCCCATAATT
TTTAAAGAGTACTACTTTACTGACCTTTGAATTATGGTGTCACTTGATGT
GGCAGTATCATCTGTCTCTTGTCATCAGTGCTTTACTGAAATGGTACTAG
ACTGGAAGACTCTCTCGTCATTCCCTTCAGAGTAGCTGCTTAATTCATTT
TACATTGTCTCCTCTTTTAATCACGGAGAACTTTTCTTTTGGAATTCTCC
TTGTGGTTACTTATTCCCCATTTCTAAGAGAACTTACCTAGTCCAATGCT
TTCAAATTGTACCCAGTGCTTAATGTCACTAAACACCGTGGACCAAATAG
ATGTCTGTTTTGAATTTCAGTGTTATGAAAGAAAATACTTCACCAATCAA
ATAGCACCACAAAGCATCCAATTT
TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAGATCAGTCTGGCGGTTCCTCATAAAACTGGATATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACCATATGTACTCCCT
GATAAGTGGATATTAGCCCCAAACCTAATATACCCAAGATATAAGATACA
ATTTCCCAAACACCTGAAACTCATGAAAAATGAAAAATGGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_f03.b1 MSMg01no448_f03.b1 CHROMAT_FILE:
MSMg01no448_f03.b1 PHD_FILE: MSMg01no448_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:33 2005
         (603 letters)



>mm_chr15_29313539_29314544
          Length = 1006

 Score = 1069 bits (553), Expect = 0.0
 Identities = 588/601 (97%), Gaps = 3/601 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcctgtttcctcttctggattgtaacctataagtgaaataagttatttcattctat 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcctgtttcctcttatggattgtaacctataagtgaaataagttatttcattctat 265

                                                                       
Query: 66  gttactttggtcatgacatttcatcccagaaataagaaaccaaactaggacaatgcatgt 125
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 266 gttgctttggtcatgacatttcatcccagaaataagaaaccaaactaggacaatgcacgt 325

                                                                       
Query: 126 gtagtttttcattatttcatattcacttagtcttggactcaagcaaaactt---ttatct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||
Sbjct: 326 gtagtttttcattatttcatattcacttagtcttggactcaagcaaaacctatcttatct 385

                                                                       
Query: 183 tttacacctattatattttctcacatacaaaaatatgactgctaagccctaaacttttct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttacacctattatattttctcacatacaaaaatatgactgctaagccctaaacttttct 445

                                                                       
Query: 243 tgtcactgagacctcacgctaacatcaacataatacaaataaattttaaaagtcccataa 302
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 446 tgtcactgagacctcacgctaacatcaacataatacaaataagttttaaaagtcccataa 505

                                                                       
Query: 303 tttttaaagagtactactttactgacctttgaattatggtgtcacttgatgtggcagtat 362
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 506 tttttaaagagtactactttactgacttttgaattatggtgtcacttgatgtggcagtat 565

                                                                       
Query: 363 catctgtctcttgtcatcagtgctttactgaaatggtactagactggaagactctctcgt 422
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 catctgtctcttgtcatcactgctttactgaaatggtactagactggaagactctctcgt 625

                                                                       
Query: 423 cattcccttcagagtagctgcttaattcattttacattgtctcctcttttaatcacggag 482
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cattcccttcagagtagctgcctaattcattttacattgtctcctcttttaatcacggag 685

                                                                       
Query: 483 aacttttcttttggaattctccttgtggttacttattccccatttctaagagaacttacc 542
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 686 aacttttcttttggaattctccttggggttacttattccccatttctaagagaacttacc 745

                                                                       
Query: 543 tagtccaatgctttcaaattgtacccagtgcttaatgtcactaaacaccgtggaccaaat 602
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 746 tagtccaatgctttcaaattgtacccagtgcttaatgtcactaaacatcgtggaccaaat 805

            
Query: 603 a 603
           |
Sbjct: 806 a 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1006
Length adjustment: 10
Effective length of query: 593
Effective length of database: 996
Effective search space:   590628
Effective search space used:   590628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)