Query= MSMg01no448_j06.b1 MSMg01no448_j06.b1 CHROMAT_FILE:
MSMg01no448_j06.b1 PHD_FILE: MSMg01no448_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:54 2005
(504 letters)
>mm_chr15_67369833_67370736
Length = 904
Score = 913 bits (472), Expect = 0.0
Identities = 493/500 (98%), Gaps = 1/500 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcaatttgtctctatagcattactacatgttggtacatcttcattattctgca 64
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 206 gaattcatcaatttgtctctatagcattactacatgttggta-atcttcattgttctgca 264
Query: 65 gaaaatcttcccaatagggtgggcccaggaatcataagattatgtatcattagataatga 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 gaaaatcttcccaatagggtgggcccaggaatcataaggttatgtatcattagataatga 324
Query: 125 caggaaatgcatatcagctgcaagaagcattcctaagatgaagtctcttctgaccttgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggaaatgcatatcagctgcaagaagcattcctaagatgaagtctcttctgaccttgcc 384
Query: 185 tctcagagcattgtagaccatgcaaagacagtggggcacctctaggaaagtcacctgcta 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 tctcagagcattgtagaccatgcaaagacagtggggtacctctaggaaagtcacctgcta 444
Query: 245 gctttagcctccccttggtggctcctgacacctatcattggttaaatattgcattcttca 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccttagcctccccttggtggctcctgacacctatcattggttaaatattgcattcttca 504
Query: 305 ttttccttctatttccctgaagagaactaaaagaaccttgacttgtaacagacttggaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttccttctatttccctgaagagaactaaaagaaccttgacttgtaacagacttggaaa 564
Query: 365 taatgaggatttgttatttcaaactggattgaattcatctacaagtatgactaaattggt 424
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 taatgaggatttgttatttcaaactggattgaattcatctacaagtatgagtaaattggt 624
Query: 425 cgtactcgggtttatgcagaaaagcttttctttcctccctctttctctaccttttctttt 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgtactctggtttatgcagaaaagcttttctttcctccctctttctctaccttttctttt 684
Query: 485 tccttcattccttcttcttt 504
||||||||||||||||||||
Sbjct: 685 tccttcattccttcttcttt 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_j06.g1 MSMg01no448_j06.g1 CHROMAT_FILE:
MSMg01no448_j06.g1 PHD_FILE: MSMg01no448_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:54 2005
(446 letters)
>mm_chr15_67564702_67565549
Length = 848
Score = 799 bits (413), Expect = 0.0
Identities = 439/449 (97%), Gaps = 4/449 (0%)
Strand = Plus / Minus
Query: 1 catggtattggagaagaagagtaagattgagaggtaaaaaccaaaaccaaaacttagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 catggtattggagaagaagagtaagattgagaggtaaaaaccaaaaccaaaacttagttt 513
Query: 61 tccaagatgacagctcgtacaagtcaatgggcataac---aaaaaaaaaaaaagatattt 117
|||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 512 tccaagatgacagctcatacaagtcaatggacataacaaaaaaaaaaaaaaaagatattt 453
Query: 118 cattgcagataccagggtttgattccagtactgccaccatgaccaagtaccttcactatg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cattgcagataccagggtttgattccagtactgccaccatgaccaagtaccttcactatg 393
Query: 178 ctgaacatcatttaggtcatttgttaagtgggaggagtaatctgcccacagttgctatgt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgaacatcatttaggtcatttgttaagtgggaggagtaatctgcccacagttgctatgt 333
Query: 238 aattattttatcagggtttaatgaatccttccttttcacccctatccacatgggagggaa 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aattatccaatcagggtttaatgaatccttccttttcacccctatccacatgggagggaa 273
Query: 298 aatgtagagaaaaaaaaatcagaagtccatatttgtgtctagaaacttttcaataccagt 357
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aatgtagag-aaaaaaaagcagaagtccatatttgtgtctagaaacttttcaataccagt 214
Query: 358 ttcaacagaatattgtctcagttacttttctattgtgatataacagcatgacccaggcaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ttcaacagaatattgtctcagttacttttctattgtgatataacagcatgacccaggcaa 154
Query: 418 tttatagaatgaaaggtttactttgggct 446
|||||||||||||||||||||||||||||
Sbjct: 153 tttatagaatgaaaggtttactttgggct 125
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 848
Length adjustment: 10
Effective length of query: 436
Effective length of database: 838
Effective search space: 365368
Effective search space used: 365368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
