BAC Information

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BAC

Clone NameMSMg01-448M22
Chromosome15 (Build37)
Map Location 43,457,367 - 43,457,797
singlet/doubletsinglet
Overlap genenone
Upstream geneAngpt1, Rspo2, LOC675960, Eif3s6, Ttc35
Downstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448M22.T7 (MSMg01no448_m22.b1)MSMg01-448M22.TJ (MSMg01no448_m22.g1)
ACCAG536932AG536933
length786755
length of high quality
(start - end)
420 (48 - 467)431 (83 - 513)
definitionCHROMAT_FILE: MSMg01no448_m22.b1 PHD_FILE: MSMg01no448_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:12 2005CHROMAT_FILE: MSMg01no448_m22.g1 PHD_FILE: MSMg01no448_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCCCCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGACCG
CGGAATTCATACATGCTTACCATGTGCTTTGTTAAAATTCATGCCCCATC
CCCTAACTTCGATTTCTCCCATACCCCTTCATACTTTTCTTTCTCAATTT
CATGTGCTTTCTCTTTCTTGTTTTTATACCCATGAATCCAAGCAGTATTG
CCTATACATGCATGGATATCGGGCCATTTGATGGAGCCTGGGTTGCCTCT
CTTTGGTCACATCTTGAAGAAGACTGGCTCTCTTTCCTACAGCAGCCACC
AATTGTCAATAGCTTCTCAGTTAGGGTGTGGGACCTCATTACACTTTCCA
CCATTTAAATTTGGATTTGGACTGGCTTATAGGGAGCAGAGGAAGTCCTA
AGTGCTATTGATATGAGGTTGGCTATGCCAAAGATCATTGATAGACTGGG
GAAAATAGAATTGTCCCCAGGCTAGGCTTATAAAAATAGCTAAGCCTCTC
TGGGGAATGCTAATGGACGTCCCACCTGTTTTTATCATTTACCGTTTTTT
TAAATCGCCCCCTTTTACTTGTTTCCCTTTTCCAACCCTTACCGTCCCAA
CCCATTTTAATCCTATTCAAAAATTTTTTTAAATATGTCAAATCCCATCC
CGGGCTTTTTATTCCCTAACCGATATTTTACCCTCCCCCCACCCCTTTTT
TTTCACCTTTTTTTCGCAACTTTTTTTTTATTCCCTCCACCCCTCTTTTT
TCTTTTAATTTGTTTTACTTCTCTTTCACCCCCCCN
TTTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCCCTGGTTTGTTTC
CTTTGTTGGAGTCCTTTATTGGTTCTATTTGGCCTGTAAATATTAAAAGA
TCCCCAAATCTAAGTTAGTGCTGTGAAACTCCACAAGGGATGACATGATA
GGGATGACATGACATGATGTGCCCTTGAGAACAAAGCTGCTATAGTTCCT
CACATGAGATCCATACAAGATTAGGCCTGAGCTTTTTCCCTGGGAAGTGG
AAGGAGGACTCAATATCCGGCAAAGGTGAGGTTCAGGAAGTCATAGCCTT
AAATTAACTGTTGCTGGGAAGGAAGAACATTTTCTTCAGTGGTGCATTAG
CCAATAAGTTGTCCACACTTTTGTAGGTAATCCCACATCTATGCTAATGT
AATAAAACAAACAAACCCTAAACTCATTGATTCAACAAGCTACACTTCGT
TAGAAATGTGCCTTTTAACATTCAGAGATTCCTCAGTTGAGACATCCTTG
GTTAGCTTTGTACCCCTTTTTAAAAAAGGTTTTTGGTCCTCCTGGAACCT
TGTAAATTTTGGAATTTAACCTCCTACCTTAGATGGTTTGTTAAAAAACT
TTTTTTTTTCTTTCTGTTTCCCTTTTTTCCCCCATTTCTGTCATTTCGTC
TTTCCACCTTTCTCATTTATTACAATCATTCTTTATACTAGATTCTATCT
CTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_m22.g1 MSMg01no448_m22.g1 CHROMAT_FILE:
MSMg01no448_m22.g1 PHD_FILE: MSMg01no448_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:12 2005
         (431 letters)



>mm_chr15_43457167_43457997
          Length = 831

 Score =  741 bits (383), Expect = 0.0
 Identities = 419/431 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattccctggtttgtttcctttgttggagtcctttattggttctatttggcctgtaaata 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattccctggtttgtttcctgtgttggagtcctttattggttctatttggcctgtaaata 260

                                                                       
Query: 61  ttaaaagatccccaaatctaagttagtgctgtgaaactccacaagggatgacatgatagg 120
           |||||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct: 261 ttaaaagacccccaaatctaagttagtcctgtgaaactccaccagggaagacatgatagg 320

                                                                       
Query: 121 gatgacatgacatgatgtgcccttgagaacaaagctgctatagttcctcacatgagatcc 180
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 321 gatgacatgacatgatgtgcccttgagaacaaagctgctgtaattcctcacatgagaccc 380

                                                                       
Query: 181 atacaagattaggcctgagctttttccctgggaagtggaaggaggactcaatatccggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacaagattaggcctgagctttttccctgggaagtggaaggaggactcaatatccggca 440

                                                                       
Query: 241 aaggtgaggttcaggaagtcatagccttaaattaactgttgctgggaaggaagaacattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtgaggttcaggaagtcatagccttaaattaactgttgctgggaaggaagaacattt 500

                                                                       
Query: 301 tcttcagtggtgcattagccaataagttgtccacacttttgtaggtaatcccacatctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttcagtggtgcattagccaataagttgtccacacttttgtaggtaatcccacatctat 560

                                                                       
Query: 361 gctaatgtaataaaacaaacaaaccctaaactcattgattcaacaagctacacttcgtta 420
           | ||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 561 gataatgtaataaaacatacaaaccctaaactcattgattcaaccagctacacttggtta 620

                      
Query: 421 gaaatgtgcct 431
           |||||||||||
Sbjct: 621 gaaatgtgcct 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)