BAC Information

Click to search

BAC

Clone NameMSMg01-449G10
Chromosome15 (Build37)
Map Location 33,626,422 - 33,626,976
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040962, Sdc2, Pgcp, 1700084J12Rik, Tspyl5
Downstream geneLOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449G10.T7 (MSMg01no449_g10.b1)MSMg01-449G10.TJ (MSMg01no449_g10.g1)
ACCAG537382AG537383
length745750
length of high quality
(start - end)
555 (75 - 629)503 (76 - 578)
definitionCHROMAT_FILE: MSMg01no449_g10.b1 PHD_FILE: MSMg01no449_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:01 2005CHROMAT_FILE: MSMg01no449_g10.g1 PHD_FILE: MSMg01no449_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCTATGTCTCTAATGTAAATCTCTAGTTCATTAGAGTCAA
AGTGAAGTCTTCTAATGGACTGTTTCACCCTCATTATTTTCAGGCTGGTG
TATAAAATGGGTAGGTTACCAAACAGAGTTCATTCCCAGTCCTTGCCCCA
TGACCTAACTTCTTTCAGGTTCCAGTCACTCTCTGCAGCATTATGCTTCC
TTCTGTACTCTGAAAATCAGGTGTGACTCGTGGAAGATGTCTACAGATAT
AAGGGAGAGGTTATTTCACTCTTTGTCTTTATTTCCTGGAATAGCCCAAG
ACATCTCAGGTACAGATCCCGATGAAATGTTTTCCTCCTATCATCCTATC
AAGCAATGGTTTTACAACCTCACTTTCTTTTTTTCTGTAGCACATTTCTG
TACTAATAATTGAGGTGTTGTAGTTGGGAAATGTCTTAGTTTCCATACTA
TTGCTGTGACAAAACACTATGAATAAAGTGACTTATAAAAGGAGACATTT
AACTGGGGGCTTACAGTTTCAGAGGGCTAGTCCATGAACATCATGTTAAA
ATACATTCAAGTATTTTGCTGAATCAGTAGCTAAGAGCTAATATTCCAAT
CTTCAGGGGTGGGGACAGATGGAAATGGTCTGGCCTTTTTGAACTTCAAA
ATGCAGAGATGATTCCATGTGACACATCTTCTTCACAATGTCACN
NNCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTTCTTGAGCTCTTTGTATATAT
TGGATATTAGAATGAATTTATGAAATTCTTGGATGAATGGATGTATCTGG
AGGATATCATCCTTAGTGAGATAACCCGATCACAAAAGAAGTCATTAGAT
ATGCACTCACTGATAAGTGGATATTAGCCCAGAAACATAGAACACCCAAG
ATACACTTTGAAAAACACAAGAAAATCAAGAAGAGGGAAGACCAATGGGT
GGATACTTCATTCCTCCTTATTATTTGTAACAAAATACCCATGAAAGGAG
TTAGAGACAAAGTTTGGAGCTAAGACAAAAGGATGGACTATCCAGAGACT
ACCCCACCCTGGGATCCATCTCATAATCAGCCACCAAACCCAGACACTAT
TGCATATGCCAGCAAGATTTTGCTGAGGGGACCCTGGTATAGCTGTCTCA
TATGAGGCTATGCCAGTAACTGGCAAATACAGAAGTGGATGCTCGCAGTC
ATCTATAAAATGAAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTAC
CCAAGGAGCTGAAGGGTTTTGCAGCACCATAGGGGGAACATCTACTAAAC
CGNAACCCCCATAGTTCGTGTCTCTAGCTGCATATGTAAAAAAATGTCCC
TAACTGCCCTAATTGGGAAAAAAAGCCCCCTTGGCCTTGTATAATTTATT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_g10.b1 MSMg01no449_g10.b1 CHROMAT_FILE:
MSMg01no449_g10.b1 PHD_FILE: MSMg01no449_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:01 2005
         (555 letters)



>mm_chr15_33626370_33627324
          Length = 955

 Score = 1035 bits (535), Expect = 0.0
 Identities = 550/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaaatctctagttcattagagtcaaagtgaagtcttctaatggactgtttcaccctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtaaatctctagttcattagagtcaaagtgaagtcttctaatggactgtttcaccctcat 548

                                                                       
Query: 61  tattttcaggctggtgtataaaatgggtaggttaccaaacagagttcattcccagtcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tattttcaggctggtgtataaaatgggtaggttaccaaacagagttcattcccagtcctt 488

                                                                       
Query: 121 gccccatgacctaacttctttcaggttccagtcactctctgcagcattatgcttccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gccccatgacctaacttctttcaggttccagtcactctctgcagcattatgcttccttct 428

                                                                       
Query: 181 gtactctgaaaatcaggtgtgactcgtggaagatgtctacagatataagggagaggttat 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 427 gtactctgaaaatcaggtgtgactcatggaagatgtctacagatataagggagaggttat 368

                                                                       
Query: 241 ttcactctttgtctttatttcctggaatagcccaagacatctcaggtacagatcccgatg 300
           ||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttcactctttgccaaaatttcctggaatagcccaagacatctcaggtacagatcccgatg 308

                                                                       
Query: 301 aaatgttttcctcctatcatcctatcaagcaatggttttacaacctcactttcttttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaatgttttcctcctatcatcctatcaagcaatggttttacaacctcactttcttttttt 248

                                                                       
Query: 361 ctgtagcacatttctgtactaataattgaggtgttgtagttgggaaatgtcttagtttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctgtagcacatttctgtactaataattgaggtgttgtagttgggaaatgtcttagtttcc 188

                                                                       
Query: 421 atactattgctgtgacaaaacactatgaataaagtgacttataaaaggagacatttaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atactattgctgtgacaaaacactatgaataaagtgacttataaaaggagacatttaact 128

                                                                       
Query: 481 gggggcttacagtttcagagggctagtccatgaacatcatgttaaaatacattcaagtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gggggcttacagtttcagagggctagtccatgaacatcatgttaaaatacattcaagtat 68

                          
Query: 541 tttgctgaatcagta 555
           |||||||||||||||
Sbjct: 67  tttgctgaatcagta 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)