BAC Information

Click to search

BAC

Clone NameMSMg01-449J09
Chromosome15 (Build37)
Map Location 75,579,283 - 75,752,395
singlet/doubletdoublet
Overlap geneZc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl
Upstream geneLynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa
Downstream geneTsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449J09.T7 (MSMg01no449_j09.b1)MSMg01-449J09.TJ (MSMg01no449_j09.g1)
ACCAG537522AG537523
length802762
length of high quality
(start - end)
201 (79 - 279)107 (139 - 245)
definitionCHROMAT_FILE: MSMg01no449_j09.b1 PHD_FILE: MSMg01no449_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:15 2005CHROMAT_FILE: MSMg01no449_j09.g1 PHD_FILE: MSMg01no449_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,579,283 - 75,579,483)(75,752,289 - 75,752,395)
sequence
TGCTTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAAT
CCGCGGAATTCAGTCAACAATTTCGCTGGCACCTCGGGCGGCGGGATGCA
CGGTGGAACCGCAGGCCTCTGAGCGTTGTGGCAGGTGGAGTGGGACAGAC
GCCTGTGGCCACCACGGGGCTAGAGGAGCAGGTCTCGGGTACTCCCTGCG
TAGAGAACCCATTTCTCTGAATTGAATTCATGGGGCTGATGGGTCTGGAC
GCCTGCAGAAATGCTCACAAGGAATCTCAGAACCCAGCTTTGGCCCCCCC
CCTTCAAGGGGTGTGGTTTCTTTTTTTCTTGTTTTTTCGTCCTGTCGCTC
CCCTCTCCTTCGGGGGGGCCTTTTTTTTTTTTTTCACACTCGCCCCCAAT
AATTTCCCCCCCCCCCTTTTTGTTTTTTGTGGCCTTTCCCCCCCTCTCGG
CGGGTGCCGCCTTCTTCCCTCTTCATTTTTATCTACCCCCCCCCCCTTTT
TTTTCTTTTGTTTTTCTCTGTCGTTTACTTCGCCTATCTTTTTTTCTTTT
TTTTATATTTTATTTCCCCCCCTCCTCTCTCTCTCTTCCTTCCTCTTCTT
CTTAGTTCTTTTATTCCCCCGCCCATTTTTTTTTTTTTATTCCCTTTATT
CTCCTTCTCATTTCACTCTCTTCACTCTCACTCCGTCATATTTAGTCTTA
TCTCCCCCCCACCTTCTTTTTTTCCCTCCTTCCCTCCTTCTTTCTTTCTC
TTACTCTTACCTTTTTACCCTTCTTGTTCTCCCACCCTCTCTCACCTTTT
CC
CTATTCACCGAGAAGTGGGAGGCCTGGNGGCGNCTGGTTTCGAACTCGAN
NGAANNANAGNAAGTTACAGGATAGGAANAGNAAATANNNNGGNGAGACC
NNAAAGACTCAAAAGTTTTTCCCCAAAAAAAAAAAGGGCTGTGTATTGGT
GACTGATGGTTAGTGCTGCTTTTAATGCAGAGAACCAGAATCCACTCCGA
GGACTGAACCCAAGGCACCCAAGCTAGGCAAGAGCTTGGAGTACCTATCT
TTTACCCCAGGCCCATCCTGGGGTGGTTCAAGTGTTTTTGTTTTTTTGGN
TTTTATACCCCCCTTTTTTTTTTTTCAGAAAGGGAAAAGGAGAGACAAGC
NAGCTTTTTTCTCCCCACGAGGAATTATACAGTCTGCTTATGACTAGTTC
CCCTTCCTCCCCCCCCTTTCTTTTTTTTTAATGCATTGACCAACGGACTA
TCAAAGCTAGGTGAAAATCCTGCCCCAGTTGTCCAAACCTAAAAGACTGC
GACCATAAAGAATTTTCACGTCCCTAACATTCCTACATCTTTAATCCTAC
CTATTTCACATTATTAATATACCATCCATACACTTGAATTAAACAAACGT
CATTATTGATTAATTTTTATTTACTCCTCTATTATCCTCAATATCTCGCA
AAACCCCTACAATTTTTTTTTTTTTTTTTTTACAACTCCGCTAATACTAC
ACATACAATAAAACACATCCCCGTTTTTATCAATCTATCTCCATTTACTT
CACATCCTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_j09.b1 MSMg01no449_j09.b1 CHROMAT_FILE:
MSMg01no449_j09.b1 PHD_FILE: MSMg01no449_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:15 2005
         (201 letters)



>mm_chr15_75579083_75579683
          Length = 601

 Score =  373 bits (193), Expect = e-108
 Identities = 199/201 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacctcgggcggcgggatgcacggtggaaccgcaggcctctgagcgttgtggcaggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 gcacctcgggcggcgggatgcacggtggaaccgcaggcctctgagcgttgtggtaggtgg 260

                                                                       
Query: 61  agtgggacagacgcctgtggccaccacggggctagaggagcaggtctcgggtactccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgggacagacgcctgtggccaccacggggctagaggagcaggtctcgggtactccctg 320

                                                                       
Query: 121 cgtagagaacccatttctctgaattgaattcatggggctgatgggtctggacgcctgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtagagaacccatttctctgaattgaattcatggggctgatgggtctggacgcctgcag 380

                                
Query: 181 aaatgctcacaaggaatctca 201
           |||||| ||||||||||||||
Sbjct: 381 aaatgcccacaaggaatctca 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no449_j09.g1 MSMg01no449_j09.g1 CHROMAT_FILE:
MSMg01no449_j09.g1 PHD_FILE: MSMg01no449_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:15 2005
         (107 letters)



>mm_chr15_75752089_75752595
          Length = 507

 Score =  184 bits (95), Expect = 2e-51
 Identities = 104/107 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgtattggtgactgatggttagtgctgcttttaatgcagagaaccagaatccactcc 60
           ||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 307 ctgtgtattagtgactgatggttagtgctgcttttaatgtagagaaccagaacccactcc 248

                                                          
Query: 61  gaggactgaacccaaggcacccaagctaggcaagagcttggagtacc 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaggactgaacccaaggcacccaagctaggcaagagcttggagtacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space:    49401
Effective search space used:    49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)