BAC Information

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BAC

Clone NameMSMg01-450E12
Chromosome15 (Build37)
Map Location 102,877,437 - 102,877,627
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
Downstream geneLOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450E12.T7 (MSMg01no450_e12.b1)MSMg01-450E12.TJ (MSMg01no450_e12.g1)
ACCAG538049AG538050
length722818
length of high quality
(start - end)
184 (107 - 290)32 (81 - 112)
definitionCHROMAT_FILE: MSMg01no450_e12.b1 PHD_FILE: MSMg01no450_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:09 2005CHROMAT_FILE: MSMg01no450_e12.g1 PHD_FILE: MSMg01no450_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTTATTTGCGGCGCTAATAGAATCACTTCGAACAGGAGCGCGGAANCA
GCTTTACTTAGATCCCGNGCCTGAGAAACTCTTGCGGTAAGGGTCTCCAC
TTCTTCTCAACCTAATAGGCAGATGCTATAGTTTCCAAAGCAGATCAAGA
AGAAGGAGACCCCTGAGTGAATATGATTAATTTTTCTTACAGAAGAGCCA
AACAAATTGTAGGGAAAATGATACTATCTTGTTTTGTACTCAGCTCCTCA
TTTCACAGTGACCTATCCCCACAACCTAGCTCTGTCTCTTCTTTTTCTTT
CATTGNTGCAATATTTTGAAGCAAATCGTAGAGGATCATTTCTTTTGAAG
TATTTCTACTGGCTATTTTAAGATTTTTTTTTTGCACAGAGCAACAATAT
GATTATGATACCTATCAAAAAATTTTTAGGAAAATCATTTGGCTTTTAAG
AGTAAAAAGGGTCTAAGAAATGCAGAGCTGTTAGGTCCCCTGTGTCTCAT
TTTANAGTTGATAAATGTCAATAATAGAAAATGAACACCGCGGGGAAAAG
ATGACATTTCCCTGTTTATCTCTGTATTTAAGCTCCCGGCAACTGCTCGT
TCCTCTCCTGGCCTTAATGTGTTTATTATTCCTGACCTGATTAATACACC
TCGCTACGTTCCCACATGGGTGTTTGCCTACAGGTGCTCTTTCGGAGATT
CTGTCTATTTTCTTCTGCGCAN
GCGATGACAGGGGGAGGCCGGGNGGGCGCCTGGTTCCTGACCCGANGNGA
ACNANAGAAGGTTACANGACCGGCGCTGNGGACTTTTTTGGTTTGTGGGG
GGGGGGGGGTTTTTTTTTCCCCCCACCAACGACCCAGCCACAGAAAAGAG
AGGAAAACGGAGGGAGAGGGGGGGGGGGGGCCAGAAAACCGACCACCCCC
CCGCCCCCACCGCCAAACCACGCACAAGCACCCAACCGCCACCCGCCACA
ATGTTTTTGCCCACGAGCAGAAAAAAAAGAAGCAAAAAAGAAAAAAAAAA
ACAAACACAAAAAAAAAAGAGGGTTTTTATCTTTTAAAGAAAAAAGGAAA
AAAAAAAAAGCAAGGAAATTGAAAACCCCCCCCCCAAACCGCGAAAAAGA
AGCCACACACACCCCCACAAACAACCCACCCCCACCCCCAGACCACGGAG
AACGGCAAAGAAAAACCACACACCAAACACACCCCAACAACACAAAACCC
CACCCCCCCGCTAACACCGACCACCCCAACCAAAAGCCGCGAGCCGAAAT
CACCGCAGAAACGCCGCCACACCACGTCAGAAAAGGCGCCAAAAGAGCCG
CAAACACCAACAAACGCCCATCCCCGCGCAGCCACCGCAAAATACACCGC
CCCCCAAACGCCCACGCACTCCGAGAAACAAGACCGACAACCGCACACCG
AGGAAAAATAGTAACCATGGTAACCAGCCACCACCCAACGCGCCCCGCCG
CACGGCGCACAAAACACCCCGAGCACACCACCACGCCGCACCCAAGAAAC
ACAACCCCCACATAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_e12.b1 MSMg01no450_e12.b1 CHROMAT_FILE:
MSMg01no450_e12.b1 PHD_FILE: MSMg01no450_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:09 2005
         (184 letters)



>mm_chr15_102877237_102877827
          Length = 591

 Score =  288 bits (149), Expect = 1e-82
 Identities = 180/193 (93%), Gaps = 11/193 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaacctaataggcagatgctatagtttccaaagcagatcaaga-agaaggagacccctg 59
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tcaacctaataggcagatgctatagtttccaaagcagatcaagatagaaggagacccctg 260

                                                                       
Query: 60  agtgaatatgattaatttttcttacagaagag-ccaaacaaa-ttgtagggaaaatgata 117
           |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 261 agtgaatatgattaatttttcttacagaagagtccaaacaaaattgtagggaaaatgata 320

                                                                       
Query: 118 ctatcttg---ttttgtactcagctcctcatttca-cagtgacctatcccca--caacct 171
           |||||  |   ||  |||||||||||||||||||| ||||||||||||||||  ||||||
Sbjct: 321 ctatcaggcactt--gtactcagctcctcatttcaacagtgacctatccccaaccaacct 378

                        
Query: 172 agctctgtctctt 184
           |||||||||||||
Sbjct: 379 agctctgtctctt 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 591
Length adjustment: 8
Effective length of query: 176
Effective length of database: 583
Effective search space:   102608
Effective search space used:   102608
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)