BAC Information

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BAC

Clone NameMSMg01-450F24
Chromosome15 (Build37)
Map Location 13,845,523 - 13,846,017
singlet/doubletsinglet
Overlap genenone
Upstream geneRnasen, Cdh6, LOC100039907, LOC666686, LOC239338, LOC666708
Downstream geneLOC674819, LOC100040024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450F24.T7 (MSMg01no450_f24.b1)MSMg01-450F24.TJ (MSMg01no450_f24.g1)
ACCAG538120AG538121
length879764
length of high quality
(start - end)
39 (77 - 115)497 (78 - 574)
definitionCHROMAT_FILE: MSMg01no450_f24.b1 PHD_FILE: MSMg01no450_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:16 2005CHROMAT_FILE: MSMg01no450_f24.g1 PHD_FILE: MSMg01no450_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAGTCCTCCTGTCACNANANGANNCACTATAGTCAGAGAATCCGCGGAA
TTCCGGAACNTTTCATCCTATCTCAATGATGGGGTGTTGTATTTTGTTGA
AGGACTTTTCAGCCTCTATTGCTATGATCATGTGATTTTTTCTTTAAGTT
TGCTTATATAGTGGGTTATATTAATGAATTTTCATTTATTAAACCACCCT
TGCATCCCTGGAATATAGCCTACTTGATCGCGCTAAATGATGGTTCTGAT
GCTTTCTTGGATCCAGTTTGCGAGAATTTGTACCAATTTTGCATTGATAT
TCATAACCCACTATCGCACTTATTTTTTCTTTTTCGCCCGGCTCCTTGCG
CGTTTTATCCCTCTCCCTCCTTGCTTCTTCATACAGCTGTTCTACATAGT
GTTTCTTCTGTCCCCCCCCCCCCACACACACATGATTATTTTCCGGTATC
ATTCTCCTCCCTCTTTATCTCCTTTCACTACCTCTTATCCTCTTTTTTTT
TCCTTCTTATTGACTCTTTTTTCTCTCTCATTTCCTCGCCTTTTTTATCC
CCCCTTTCCTGCTCTTCGTTTGTCTTTTCCCACCCCTTTCTCACCCTTCC
TCCCTCTTCATCTATGCTCCTTTATATTTCACCCCCTGTTTCCAACTTCT
CCCATATATCTCCCTCCTACCCCTCCTTTTCTTTACTACGTCCCTCCGTC
GCTCCTTCCCCTCCCCCTTCCCTCTTTTTATTTCCTCTCCTCANTTCCTT
ACCTCCCCCTTCTTCCTCCTCTTCCACCTCTCCCATTNCTTCCTTTACCC
TCTCCCCTCCTTTTCCCATTTCCTTACCCCTTATCATCCTTTCTTTTATC
TATTTCCTACTAGTTACTCTTGTCCACTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTCGTGTAGGGGAAGGAACT
TTAATAGAACAATTAAACCCCTCTGCTTTTATTCCAAGAATATAAAGGAG
AATTGAACACTATAGATAACACAAAGTAATTCACAGGTACGCTAACCAGA
GGGATCTAATCAAAATATACTCAGTATTAATGAATCGATTTCTGTCTTAG
AAAGCAGTATGTAAGTCTTGTTTTTCCTTTATATAAATCTCTCTTTTCTA
GTGTAGGTTGGGGGTTTACCTGATGCTGTTATGCATTCGAATGCTATATA
ATACACTCTCCCCCACAAGATATGGTTGCAGTGATGAAGATGTTATGTAA
ACTTTGCTCATCAATGGTCTCTGACTAGTCAAATAAAAGTGGCTAACAAC
CAATAACTGGGGATAATAAAGGTAAGCAGGGGTTTGCCAATGGTATGGGG
TAACAGGCAGGGGCCATAAGAAGGAGCAGGAGGGATGGAGAGAGAGAGAG
AGAGGGAGAGAGAGAGAGAGAGAGATTTNTTTTTTTTTNTNNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNTTCTTTTTTTTTTTTCCTNTCTTTTC
TTTTGTCCCCCTTCTTTTTTTTTTTTTCCCCCCCCGCTCTTTTTTTTTTT
CTTCTTTCTCTCCCCGCCCTTTCGGCTTGTTTCCTTGTTGCTTTTTTGTT
TTTTTTTCCTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_f24.g1 MSMg01no450_f24.g1 CHROMAT_FILE:
MSMg01no450_f24.g1 PHD_FILE: MSMg01no450_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:16 2005
         (497 letters)



>mm_chr15_13845323_13846219
          Length = 897

 Score =  926 bits (479), Expect = 0.0
 Identities = 491/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattcgtgtaggggaaggaactttaatagaacaattaaacccctctgcttttattccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattcgtgtaggggaaggaactttaatagaacaattaaacccctctgcttttattccaa 260

                                                                       
Query: 61  gaatataaaggagaattgaacactatagataacacaaagtaattcacaggtacgctaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatataaaggagaattgaacactatagataacacaaagtaattcacaggtacgctaacc 320

                                                                       
Query: 121 agagggatctaatcaaaatatactcagtattaatgaatcgatttctgtcttagaaagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagggatctaatcaaaatatactcagtattaatgaatcgatttctgtcttagaaagcag 380

                                                                       
Query: 181 tatgtaagtcttgtttttcctttatataaatctctcttttctagtgtaggttgggggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtaagtcttgtttttcctttatataaatctctcttttctagtgtaggttgggggttt 440

                                                                       
Query: 241 acctgatgctgttatgcattcgaatgctatataatacactctcccccacaagatatggtt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctgatgctgtcatgcattcgaatgctatataatacactctcccccacaagatatggtt 500

                                                                       
Query: 301 gcagtgatgaagatgttatgtaaactttgctcatcaatggtctctgactagtcaaataaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gcagtgatgaagatgttatgtaaactttgctcatcaatggtctctgactagttaaataaa 560

                                                                       
Query: 361 agtggctaacaaccaataactggggataataaaggtaagcaggggtttgccaatggtatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtggctaacaaccaataactggggataataaaggtaagcaggggtttgccaatggtatg 620

                                                                       
Query: 421 gggtaacaggcaggggccataagaaggagcaggagggatggagagagagagagagaggga 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 621 gggtaacaggcaggggccataagaaggagcaggagggatggagaaagagagagagagaga 680

                          
Query: 481 gagagagagagagag 495
           |||||||||||||||
Sbjct: 681 gagagagagagagag 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)