BAC Information

Click to search

BAC

Clone NameMSMg01-450K03
Chromosome15 (Build37)
Map Location 42,501,773 - 42,502,136
singlet/doubletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450K03.T7 (MSMg01no450_k03.b1)MSMg01-450K03.TJ (MSMg01no450_k03.g1)
ACCAG538315AG538316
length849746
length of high quality
(start - end)
---364 (76 - 439)
definitionCHROMAT_FILE: MSMg01no450_k03.b1 PHD_FILE: MSMg01no450_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:38 2005CHROMAT_FILE: MSMg01no450_k03.g1 PHD_FILE: MSMg01no450_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXATTCAGAGCCGGACCGC
GGAATCACTCGTAACTCAGATCCTTCACGGAAAGTTTTATTGCTTCCCAA
AAGAAAACCCCCATCACCCGGGAAGGTGGCTTTAATTATATAGCCCACAG
TGTGACGTTTCAGCACCTGATGTGGCGTGACAGCACCTGTTTTAGTTGTC
GCCCATCACCCCATAACTACGGCCCGAGATGGGCAGCGACTGGTTGTGAA
TTAACTCTTGACTGCGAAATAAGCTCTGTATAAGAGCGCGGCCAGGCCAT
CCGCCTTATTTTTTTGTATGCTCCCCGNCNNCCCCAGGGTTTTCCTCCCT
TCCTGTAAGGGCGCNCGGGGTTTATATGATGATTTGCCCTCCTCAATCTC
CCCATAAAATTAGCCAACAAAATAATTTTTTCGTGGCTTTTTTCTAAACA
TATTTCCTCGCCAATCACCTCCCTCTATCCCTCTGTGTATAATTTTTTAC
CTCTTTTTTTCACAAATAGCTTATCCCTCTCTACTCCCGGTGAATTATTT
CGTCTTTTATACCACCCGACTATGTAGATTCTAATCTTGTCTTTTAACTT
ACTTTTCTTTTCCTCTTATACCTTTCCTTCCCCGCAATCGCCTCGCCTTT
CCCGCTATACACCCTTTGCTTCGCTGCTTCCTCCTTTTCTCTCCTTATTC
CCCTTTTCTCTTTTCCTATCCTTTTATCCCCCCCTCTTTTCTCCTTTTTC
CCGCTCTTTATCTCTTTCCTTTTCTTCCATTTATCGTTTCTTTTCTACTT
TTCTCTTCTTTTTTATGTTTTCTCACCATCGCTCCTTCTTCTTCCCGCN
TGCAATGATAGTGGGAGGCCTGGCGGNCGGCCTTTTCAAAAAGGGTAGGN
GACACTATAGAATGTCACGAGAAATTCCAGAGTTGTTTAAGTACATAATG
TGTATGAAGAATATGAAATATTCTGGTATTTTGAATAAGAGACTTAAGCA
TCTACAAATTGTGTCTGCCAACCCCTTGGATCCAAACCCTCTTAAGGATA
CCAATGGAAGAAACCGCCCCCCCTTCTTTTTTCAACTAGTAATGAAAGAA
GTAATTATGTGGAGCTATTCAAAGTATAAATAACATTTATAGCCATAATG
CCTAACTATATTCCACATATTATTCCTTAGATATACAGGGTGAGTATCTT
TTACATGGTCTACATGAAAAGTCATCAAACCATTGCCCTTGGGCCAAATC
CTGTCTGTCACCATGTTTATAAATAAAGTTTGATTACAATAGAACCACAA
CCACCCTCCTTCTTGTGTGCATTGTTCAAAGCTGTTTTTGTCCTACAAAG
GTAGAATGTATTAATTATAGTTGAAATTAACTGTCCAATATAACTTACAT
ATGCATTTTAGTATCTGGCCCTTTAATAAAATTCTTAAGCCTGTTCTATA
TCATAAGAGGAAATCTCTTTGATATTGTTACTATTGTCAGGTACTCTGCG
ATATTTCTTGTGTTTTAACAATTCTGATTCTTCTTCACCTACTTCTCTTA
CTTTTCCTTTTCCCTCAACTCCTCTATTAACTCTATTCTTGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_k03.g1 MSMg01no450_k03.g1 CHROMAT_FILE:
MSMg01no450_k03.g1 PHD_FILE: MSMg01no450_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:38 2005
         (364 letters)



>mm_chr15_42501642_42502405
          Length = 764

 Score =  650 bits (336), Expect = 0.0
 Identities = 357/364 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagagttgtttaagtacataatgtgtatgaagaatatgaaatattctggtattttgaa 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 495 tccagagttgtttaagtacataatgtgtatgaggaatatgaaatattctggtattttgaa 436

                                                                       
Query: 61  taagagacttaagcatctacaaattgtgtctgccaaccccttggatccaaaccctcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taagagacttaagcatctacaaattgtgtctgccaaccccttggatccaaaccctcttaa 376

                                                                       
Query: 121 ggataccaatggaagaaaccgcccccccttcttttttcaactagtaatgaaagaagtaat 180
           ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct: 375 ggataccaatggaagaaccccccccccctttttttttcaactagtaatgaaagaagtaat 316

                                                                       
Query: 181 tatgtggagctattcaaagtataaataacatttatagccataatgcctaactatattcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tatgtggagctattcaaagtataaataacatttatagccataatgcctaactatattcca 256

                                                                       
Query: 241 catattattccttagatatacagggtgagtatcttttacatggtctacatgaaaagtcat 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 catattaccccttagatatacagggtgagtatcttttacatggtctacatgaaaagtcat 196

                                                                       
Query: 301 caaaccattgcccttgggccaaatcctgtctgtcaccatgtttataaataaagtttgatt 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 caaaccgttgcccttgggccaaatcctgtctgtcaccatgtttataaataaagtttgatt 136

               
Query: 361 acaa 364
           ||||
Sbjct: 135 acaa 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)