BAC Information

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BAC

Clone NameMSMg01-450O11
Chromosome15 (Build37)
Map Location 11,248,226 - 11,248,350
singlet/doubletsinglet
Overlap geneAdamts12
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3
Downstream geneTars, LOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450O11.T7 (MSMg01no450_o11.b1)MSMg01-450O11.TJ (MSMg01no450_o11.g1)
ACCAG538519AG538520
length742782
length of high quality
(start - end)
244 (326 - 569)127 (185 - 311)
definitionCHROMAT_FILE: MSMg01no450_o11.b1 PHD_FILE: MSMg01no450_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:59 2005CHROMAT_FILE: MSMg01no450_o11.g1 PHD_FILE: MSMg01no450_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATCTATAATTTGCGGCCGGTAAAAGAATCACAATCGAAATAGGATGCG
NGGNAATCTCATTTTCGAAATCTATGCTCCAAATGCAAGGGCAGCCACAT
TCATTAAAGAAACTTTAGTAACGCTCAAAGCACACATTGCACCTCACACA
ATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTG
GAAACAGAAACTAAACAGGGACACAGTGAAACTAACAAAAGTTATGAAAT
TTATGGACCTGACAGTTATCTACAGAACATTTTATCCTAAAACAAAAGGA
TATACCTTCACCTCATTACTTCTCGGGACCTTCTCCAAAATTGACCATAT
AATTGGTCACAAAACAGGCCTCAACAGATAAAAAAATATTGAAATTGTCC
CATGTATTCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAAC
ATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCT
CAATGATACCTTGGTCAAAGGAAGGAATACGGAAAGAAATTAAAGACTTT
TTAGAGTTTAATGAAAATGAAGCCACAACGTATCCAAACTTTTGGGACAC
AATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCTATA
ATATATGGGAGAGAGCACATACTAACAGTTCGACAACACATCCTAAAGTT
CTAGAATATAAGGAATCATATTACCCCACAGGAGTATAACCC
GCGATGCAGTGGTAGCCTGGGGGCGCCTGTTTCCAACATTAGGTGAACTA
TAGAAGTTTCGCGAAATTCCCCTCTCTTTCCAAATTCCAAATCTTCCTTT
GAGGGAAGCGTCATAGGGTGCAACAATGATGTTGCATGCTCTTGTCTGAA
GGTAAGTCTCCCTAGTGGGTAAGTCTGTCTAGTGAGATGCCTCGTGGTCT
TCTTCTGAGACACAGACTTACTCCCAGACAGTGGAGCTAATGCCTAGACT
ACGGAGGGTCCTGAGCCTCTGCAGACTTTCTAGGTAGTTTTCTCTTTTCC
AAAGTATTATCTGTTATAAGAATCTGGTTCTCTGGAGAGGTGACAGGCGT
CTAGGGAAGCCTAGCACTGGTCATTTATAAGACACAGACTGGGCACCCAT
AGCTCACACCTGCTCTTGCTACCTGCCTGGCCCCAAACTCTGCTGCTGAC
CGCTGCGTTCTGGGTTTGACTCAACTTCATTACTGGATGATGTTTCTGAC
TATTCATCTTCATAGCTCCTGCACTACTTACATGTTTTTACTTGCCCCTT
GCTTCTTGCACCTTTGCATTCAAGCATTATTGTTAATCTATCCTTTTTTT
TGCCCTCTTCCTCCATATCCTCCTTTTATTTTTCCTCACCTTTTCCTCCA
TCTTCTTTTTCCTTCTTTCTTTTCTTCTCATCTCTTTTTCTTTTTCTCAC
TTTTCTTTGTTCTTTCATTTTTCCATTTTTTCTCCTCCCACTTTCCTTCT
TTATTTCCCTTCTTTCTTCCCTCCCTTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_o11.g1 MSMg01no450_o11.g1 CHROMAT_FILE:
MSMg01no450_o11.g1 PHD_FILE: MSMg01no450_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:59 2005
         (127 letters)



>mm_chr15_11248026_11248552
          Length = 527

 Score =  226 bits (117), Expect = 3e-64
 Identities = 123/125 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgcctcgtggtcttcttctgagacacagacttactcccagacagtggagctaatgcc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatgcctcatggtcttcttctgagacacagacttactcccagacagtggagctaatgcc 266

                                                                       
Query: 61  tagactacggagggtcctgagcctctgcagactttctaggtagttttctcttttccaaag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagactatggagggtcctgagcctctgcagactttctaggtagttttctcttttccaaag 206

                
Query: 121 tatta 125
           |||||
Sbjct: 205 tatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)