Query= MSMg01no450_o13.b1 MSMg01no450_o13.b1 CHROMAT_FILE:
MSMg01no450_o13.b1 PHD_FILE: MSMg01no450_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:59 2005
(538 letters)
>mm_chr15_56938653_56939591
Length = 939
Score = 959 bits (496), Expect = 0.0
Identities = 528/543 (97%), Gaps = 9/543 (1%)
Strand = Plus / Plus
Query: 1 gctccttggcaaaggcaagtcttttttttttattagatattttctttatatacatttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctccttggcaaaggcaagtcttttttttttattagatattttctttatatacatttcaa 260
Query: 61 atgctatcccaaaagttccctataccctccccccttcagctccttgggtgctttctctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctatcccaaaagttccctataccctccccccttcagctccttgggtgctttctctag 320
Query: 121 cttcttcattgggggccctgtgttccatcttatagatgactgttagcatctacttctgta 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctccattgggggccctgtgttccatcttatagatgactgttagcatctacttctgta 380
Query: 181 tttgccaggcactggcatagcctcataagagacagctataacagggtcccttcagcaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgccaggcactggcatagcctcataagagacagctataacagggtcccttcagcaaaa 440
Query: 241 tcttattctttta----accacctcttcattcccacaaactgtttttagtgactagccac 296
||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttaatc----accaaaccacctcttcattcccacaaactgtttttagtgactagccac 496
Query: 297 aaactgcagcatcccttactctacctctgcttgcatttgagtcttccacttgaaatttga 356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaattgcagcatcccttactctacctctgcttgcatttgagtcttccacttgaaatttga 556
Query: 357 tccaatatggatatgacagtggtatcccaaaaataatgatttttttttt-gctgtgctct 415
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 557 tccaatatggatatgacagtggtgtcccaaaaataatgatttttttttttgctgtgctct 616
Query: 416 tgattttctttttgtgtaaatgctgttcttggatgttctgaattcccttctgtgtagtat 475
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 617 tgattttctttttgtgtaaatgctgttcttggatgttctgaattcccttccgtgtagtat 676
Query: 476 tttcttcctgactgcctcttanagttatattgatttcataacctattttagtttctttgc 535
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tttcttcctgactgcctcttaaagttatattgatttcataacctattttagtttctttgc 736
Query: 536 tgt 538
|||
Sbjct: 737 tgt 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space: 490512
Effective search space used: 490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_o13.g1 MSMg01no450_o13.g1 CHROMAT_FILE:
MSMg01no450_o13.g1 PHD_FILE: MSMg01no450_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:59 2005
(396 letters)
>mm_chr15_57061477_57062272
Length = 796
Score = 598 bits (309), Expect = e-175
Identities = 318/321 (99%)
Strand = Plus / Minus
Query: 76 gttatctattgaatgtaaagtccccaacttgtcctttctgtggcattgaaatggtttaaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gttatctattgaatgtaaagtccccaacttgtcctttctgtggcattgaaatggtttaaa 737
Query: 136 gttttgacagtagagggcactggagggatattgttagaagatgggcttttgaactgtccc 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gttttgacagtagagggcactggagggatattgttagaagatgggcttttgaactgtccc 677
Query: 196 tgaagagtttcatccttttctcaagttggaagctaggtttccatgcctttctccagaagg 255
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 676 tgaagagtttcatccttttctcaagttggaagctaggtttccatgccagactccagaagg 617
Query: 256 atgaatgaatgaatgaatgaccctggatgaatgtcagtgatcatatcacatgtgtataac 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atgaatgaatgaatgaatgaccctggatgaatgtcagtgatcatatcacatgtgtataac 557
Query: 316 cctgcttgtcttctgggagactcagaagccactatcatttcccagaagtctctatagccc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cctgcttgtcttctgggagactcagaagccactatcatttcccagaagtctctatagccc 497
Query: 376 aatcatgctttcctctgaatg 396
|||||||||||||||||||||
Sbjct: 496 aatcatgctttcctctgaatg 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
