BAC Information

Click to search

BAC

Clone NameMSMg01-451C05
Chromosome15 (Build37)
Map Location 51,418,870 - 51,419,200
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644, LOC100039662
Downstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451C05.T7 (MSMg01no451_c05.b1)MSMg01-451C05.TJ (MSMg01no451_c05.g1)
ACCAG538699AG538700
length749732
length of high quality
(start - end)
342 (79 - 420)36 (74 - 109)
definitionCHROMAT_FILE: MSMg01no451_c05.b1 PHD_FILE: MSMg01no451_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:17 2005CHROMAT_FILE: MSMg01no451_c05.g1 PHD_FILE: MSMg01no451_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGAATAGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTCTTCTTCTTGAAACTGCATTCTCTGTAGAACCC
ATAAGCCTCCAGTGGCTCCTCTTACTGCTGCTCTTTTGTGAAAATGGGTT
TCTTTTGCTGGTAGGAAGATAGCAAGGAGATCCAAAAGAAATCTCACTCT
CTTTCACATAAGATATATAGAATGTGACCAACATAGCAAAGAGCATAACT
TTATGCCTTGGAGAATCTACCAATGCCTCTCCTTAAAGAAAATGGCCAAG
GAGAGCAGTAACTGCTGGGAGTACTATGAGCAATGCAGTCAAGTGGCAAG
TCTCTTATAGCCTGATTACAGTACTTTCAATGAGATCTTATTATCTCCAT
TGCATAGGCAAAATAATTAAAGCTTGAATAGCCTATATAGGTTGCCATCA
TTCTCACAGTTGAGATGTATTAAAGTCAGGATTCAACCCCAGGACTATCT
GACCCCTCTTCCTTTATAATTACTCCCAATCTTAATTTATCGTGCGCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCCCTCGCTTTTTTTCCCT
CGTCCCTCCCCTCCTCCCTGATTCTCTTATTCTTTATCCACTCCAATTTT
TCAATGGTTATCCCGCTTTTATGTTGATTCTTCTATTTTCACCTTTGTTG
TATACCATTTTTACGGCACTCTTATTCACTTCCCTTCATGTTATCTCCG
TTTCATGCAGTGGGTAGGCTGGCGGCGCCCTTCAACAACTGXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGCACAAGACACATAGAAGATTGGC
TTAGTTGTTGTCTCGAGTGCATAAATAAAGGCTATTTAAAAGCCTGCCCC
AACAAAAAATTTTTGTGTGTTCCCCCCCCTTCATCATCCCTTTTCCACCC
CCTTCATCCCAAACGCCATTTTTCCCCCTTATAAATATTCTAGCCAACTC
CCTTCCCTTTCCCTCAAGTGGGCCCCCGGGAAAAAATTTTTCCCGGGGGG
GGAAGAGGGGTTTTTATAAATAAGTGTTTTAAAAAAATCTTTTTGCGTGC
CCCCGACCTCAAGACTTCATCTCTCCTCTCCTTATTTTTATCTCCCCCAT
NNNNGTGGAAAAAAACTCCCTCCTCCTCCCTTCTCCCCTCTTTTTTTTTC
TCTGTTGGGGGGGATCACCCCTCGCGGGGGGTGGTATCTTTTTCTCTGCT
CCTCCCATCATTATATTTTTTTTCTTTCCTCGCCACCCTTGCTTTCTTTT
TTGTTTCTCTGCCCCTTCCCTTTCTTTTCCCTCTTTAATCGCACCCCCTC
CCCCTTCAATGAACCGTATTTCCTCTTCCTGTCTTATACCTTTAAAATTT
ATTCTCCCTATACGCCCATGATTTCCCTTCTTCCTACCATTCTCCTCTCC
TTTCCCCCTATCTTCTTTTTTTCCGTTAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_c05.b1 MSMg01no451_c05.b1 CHROMAT_FILE:
MSMg01no451_c05.b1 PHD_FILE: MSMg01no451_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:17 2005
         (342 letters)



>mm_chr15_51418659_51419400
          Length = 742

 Score =  553 bits (286), Expect = e-162
 Identities = 323/342 (94%), Gaps = 11/342 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgcattctctgtagaacccataagcctccagtggctcctcttactgctgctcttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aactgcattctctgtagaacccataagcctccagtggctcctcttactgctgctcttttg 271

                                                                       
Query: 61  tgaaaatgggtttcttttgctggtaggaagatagcaaggagatccaaaagaaatctcact 120
           ||||||||||||||||||||||||||||||||           |||||||||||||||||
Sbjct: 272 tgaaaatgggtttcttttgctggtaggaagat-----------ccaaaagaaatctcact 320

                                                                       
Query: 121 ctctttcacataagatatatagaatgtgaccaacatagcaaagagcataactttatgcct 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 321 ctctttcacataagatatatagaatgtgaccaacatagcaaagagcatgactttatgcca 380

                                                                       
Query: 181 tggagaatctaccaatgcctctccttaaagaaaatggccaaggagagcagtaactgctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagaatctaccaatgcctctccttaaagaaaatggccaaggagagcagtaactgctgg 440

                                                                       
Query: 241 gagtactatgagcaatgcagtcaagtggcaagtctcttatagcctgattacagtactttc 300
           |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 441 gagtactatgagcaatgcagtcaagtggcaagtcacttatagcctgataacagtacttcc 500

                                                     
Query: 301 aatgagatcttattatctccattgcataggcaaaataattaa 342
           |||||| ||||||||||||||||| | |||||||||||||||
Sbjct: 501 aatgaggtcttattatctccattgtagaggcaaaataattaa 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)