BAC Information

Click to search

BAC

Clone NameMSMg01-451E01
Chromosome15 (Build37)
Map Location 88,815,726 - 88,816,319
singlet/doubletsinglet
Overlap geneMov10l1
Upstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558
Downstream genePanx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451E01.T7 (MSMg01no451_e01.b1)MSMg01-451E01.TJ (MSMg01no451_e01.g1)
ACCAG538787AG538788
length728723
length of high quality
(start - end)
593 (74 - 666)624 (81 - 704)
definitionCHROMAT_FILE: MSMg01no451_e01.b1 PHD_FILE: MSMg01no451_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:26 2005CHROMAT_FILE: MSMg01no451_e01.g1 PHD_FILE: MSMg01no451_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTTGCCCCCAATXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCCGAAAGG
ATCCGCGGAATTCCAATGTTTCTGACTTGATCATTTACATTTATCATCAT
TTGTTTTGTTTTGTTTTGTATAGAAATCACTATAACGGATAAAGCCCCTT
GTCCTCACTCACAGCCGATTTCACTACATTCTCCTCGGCTAGGCCATGAC
TGAGAAGCTAACAAATGTGGTGACTCAGGGTGAGGAGTGACTCCTTATAA
ACTAGGACTTACTCTGATTGCTTTCAGTCCATTTGACACTTTGNTTTCTT
CAACGACAGCAATGACTTCCTGTCCCACGTTCAGAAGCACTTTACTCGTC
ACAGCGTCATTGGAAAAGTAGATCAAGTCGTCAATCATGCCATAGTCACT
GCAGTACCTTGTCACAACGCCCTGCACCGTTTTCAACCTGGTGTCACCTG
AGATAAGTGAGCACAGGGGGTGTATTAATAAAAAATAATCATCCCAGGGC
CGGAGAGAACGGCAGAGTGCTCGCTGGTCCTCCAGAGGACCCAAGTTCAG
TTCCCAGCAACCATGGGAGGGGCTCATAGCCATCTATAGCAGCTGAGGAT
CTCACACCTTCCTCTGGCCTCTGCAGGTACCCCATACATGGGGTATATTC
CTCTCCCCCACCCCTGCCTTTGAGACTCTCTCTCTCTCTCACGCTTTCTC
TCTCTCTCTCGCTCTCTCATATTAGGAG
TTAGGGCACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGTCCTCCTGTCTACCTGGAA
TGGGTATCCTAGTTAGGGTTACTATTACTGTGATAAACACCATGACCAAA
TTAGGGGGGAAAGGGTTTATTTGACTTACTGTAGTCTGTCATTGAAGGAA
GTCTGATCAGAAACACAAGCAATGCAGAAATCTGGAGGCAGGAATTAATG
CAGAGGCCAGGAAGTGGTACTGCTTACTGGCTTGTTTCTCTGGACTTGCT
CAGTCCGCTTCCTTATAGAACCCAGGACCACCAGCCCAGGGATGGCGCCA
CTCACAATGGGCTGGACTCTCCCTGATCAATCACTAAGAAAAGGCCTTGC
AGCCTGATCTTTTTTGGACAGGGCTTCTCTGTGTAGACCTGGCTGTCCTG
GATTCACTCAGAGATCTGCTTGCTTCTGCCTCCCCCATGCTGGAAATTCA
AGCTACATGCCGCCACCACCACCACTGGCTTTTACAGCCTGATCTTACAG
AAACATTTTCTCCACTGAGTTTTCCTCCTTTCAGATTATTCTAGCTTGTG
TCAAGTTGACATAAAACTAGCCAGCACAGTAAGTACATATGACATCTTCC
ATAAAGATGGTTCTACAGGTTAAATACATGAGCCACCATCTATACAGAAA
GGTTCTAAGATTGGTAAGCTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_e01.b1 MSMg01no451_e01.b1 CHROMAT_FILE:
MSMg01no451_e01.b1 PHD_FILE: MSMg01no451_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:26 2005
         (593 letters)



>mm_chr15_88815650_88816638
          Length = 989

 Score = 1085 bits (561), Expect = 0.0
 Identities = 585/598 (97%), Gaps = 9/598 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacttgatcatttacatttatcatca-----tttgttttgttttgttttgtatagaaatc 55
           ||||||||||||||||||||||||||     |||||||||||||||||||||||||||||
Sbjct: 670 gacttgatcatttacatttatcatcatttgttttgttttgttttgttttgtatagaaatc 611

                                                                       
Query: 56  actataacggataaagccccttgtcctcactcacagccgatttcactacattctcctcgg 115
           |||||||||||||||||||||||||    ||||||||||||||||||| |||||||| ||
Sbjct: 610 actataacggataaagccccttgtc----ctcacagccgatttcactagattctccttgg 555

                                                                       
Query: 116 ctaggccatgactgagaagctaacaaatgtggtgactcagggtgaggagtgactccttat 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctaggccatgactgagaagctaacaaatgtggtgactcagggtgaggagtgactccttat 495

                                                                       
Query: 176 aaactaggacttactctgattgctttcagtccatttgacactttgntttcttcaacgaca 235
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 494 aaactaggacttactctgattgctttcagtccatttgacactttgttttcttcaacgaca 435

                                                                       
Query: 236 gcaatgacttcctgtcccacgttcagaagcactttactcgtcacagcgtcattggaaaag 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gcaatgacttcctgtcccacgttcagaagcactttactcgtcacagcgtcattggaaaag 375

                                                                       
Query: 296 tagatcaagtcgtcaatcatgccatagtcactgcagtaccttgtcacaacgccctgcacc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tagatcaagtcgtcaatcatgccatagtcactgcagtaccttgtcacaacgccctgcacc 315

                                                                       
Query: 356 gttttcaacctggtgtcacctgagataagtgagcacagggggtgtattaataaaaaataa 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gttttcaacctggtgtcacctgagataagtgagcacagggggtgtattaataaaaaataa 255

                                                                       
Query: 416 tcatcccagggccggagagaacggcagagtgctcgctggtcctccagaggacccaagttc 475
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 254 tcatcccagggccggagagaacggcagagtgctcgctgctcctccagaggacccaagttc 195

                                                                       
Query: 476 agttcccagcaaccatgggaggggctcatagccatctatagcagctgaggatctcacacc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agttcccagcaaccatgggaggggctcatagccatctatagcagctgaggatctcacacc 135

                                                                     
Query: 536 ttcctctggcctctgcaggtaccccatacatggggtatattcctctcccccacccctg 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ttcctctggcctctgcaggtaccccatacatggggtatattcctctcccccacccctg 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 989
Length adjustment: 10
Effective length of query: 583
Effective length of database: 979
Effective search space:   570757
Effective search space used:   570757
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)