BAC Information

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BAC

Clone NameMSMg01-451G23
Chromosome15 (Build37)
Map Location 45,008,629 - 45,009,286
singlet/doubletsinglet
Overlap genenone
Upstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451G23.T7 (MSMg01no451_g23.b1)MSMg01-451G23.TJ (MSMg01no451_g23.g1)
ACCAG538924AG538925
length7741,536
length of high quality
(start - end)		632 (47 - 678)---
definitionCHROMAT_FILE: MSMg01no451_g23.b1 PHD_FILE: MSMg01no451_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:41 2005CHROMAT_FILE: MSMg01no451_g23.g1 PHD_FILE: MSMg01no451_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTAATATAGGGAGAAATAGTGTAATTATATTATAATCTCAAA
ATAATAATAAAAAACCTTAAATGTTCTATTTCAGGTTGCTGTATTTTTTT
CTTCCTACAAGATTTCATCAATAACATTGTTTTTCTCAATGTCATTTTCC
CTGAAATTATTCACCACAAGGTCCATTCATGCCATTACAATAAATCAGTG
TAACCTCAGATCATTTAATTTATTAGTATCATAATGTTTTGTTTAAGATT
TCCTTCTGGACATAGTCTTAACAAGACAAGGAAAGTTATAGTGTCCTAAT
ATCTGAAATATAATATGGTATAATGCAATCTTACTGATTTGAAATTAATG
CATATTTTATATGTTTCTCTTGGATCAGTTATGAAAATAAAAATTTACTG
CATATTCTCTTTCTCTTACTCCTTTTCTCTGTACTAAGCAATGATTCAAG
AAACAGGGACCCAACATATACACTGTTTCTAATCATGAAACGAATGAAAC
AAAAAAGTACATTTTCATGCTTATCTTTGGTCATTGAAGGAACAAATATG
ATTAAAATAAATTATAATGAATTTTCTTCTCCATAAATTCCATAATTTCA
TTAGGGATATTATAAATTTTCCAATGTGTGTGTAACAGATTAAAATGTAT
TCAATTGGNTTTTGTATTATTTATGTAAAAATATTCTTCACTACTCTAAA
AAATTTCCAGTAATTTTTTAAGCT

TATGAGATAAGAGCAGAGAATGAGATATTTCTTGTAAGCCAGAGACTATT
GGTCCCCTACCTGTATATACAATATTATATATCTACTTCTATCTCGTTGG
TACTCATCGTTATATAATGTATAATCCATTATCACGCACGGTGATAGCGA
CTATCCTGCGCTCTTATTACCCTCTCCAGCGTCGCTCACACTCTGCGCGT
CTATTACTATCGTACTAAATACCATATATGAGCGCGATGTTTCAGTCCGT
GTCCCATCCCGGTTGCCGCTTGTAGAGCGATAATAACAACGCGCGAGCAG
ACACGCTACTAGGCGTCGAGTATGATAANCGTCAGCGTTGACAGCGACAG
TCGCGAAGCGGCAGCTATAGACGACTACGCACCAGAGTATTCGTAACGAT
GGTAGTGTGTCGCTCGTCGCGAGCATAGTACGCCGGCGCTTCGTTTAATA
TATCCGCCGCTCCATTTTCGGCCGCCTCTCTTGTATATCATTTTTCTCCA
CTCCCATCGCTGTCTCTCTCCTGCCCGCTTCCGCTCATCCAATACGTTTC
TTTATATCGCAACGTCGAGAGATACGGAGATGCGAGACGTGACGTTATGA
CGAGATTCGTATGGACCGTAGATTACATTATATGATGTGATGCTATAATG
ATCAGTCAACAGACACGGANCGTATCGTCGACGTATAGCACTGTTGCGGA
AANGTATCGTGAGCGTATCCACACGCACAAAATGCGCTCGACATATAGCA
GCGTGTCTGAATCTGCAGCGTTATNCACGCGCTAATGATATAAATGTTGG
TACGCGCGGAAGCGCGTCGCATGTTATGCGCGATGTGTCGAGGTCAGCGC
GTGGCGCTCCGCACAGATACTCAGTACTCGACGTTATTAATATCGTGAAG
TATTAATGTATGTGGTATATTCCGACAGTGACATGTAATGCGTGTGGCGC
GTATTATTATACGCGTACTCTCGCAACATTGCATCTATACACTATTACGC
AGTCATCACGACCGCGAGCGCGAAGTACGGTGCCGCTGATTGTCGCTGTG
CGTATCTCGATGTGATGCTTGTGTGATGCGCGCGCGATATCTGACGCGCA
TAGCGCTNCACTCCGTCTTGTCATGTATGGTGTTGACAGCGTACGCGTGT
CTTCTGCACGCCGCGTTATCGCCCACCATCACGTTGTACTATCGAGCCGC
GTATACGTGTGATCACTCTCGTCATATGCAGCGCGNATATACTCTCCGCT
ATNTGTGAGTTAGTACTCGACAGNATCCACGCTATGTNCATAATCACGAT
CCCGNTGATCGGCGACGTACGACTGTGTATGATTCGCTCGTAGTCCACNT
TTATGACTATATATCAACGCTACCGCGTTCGNCTGACGCGCGCTCAAACA
TACCGANTNATATACACGCCGTAACCATATATACAGTCGAGCGATATGGA
GNCGCTGCATGAGTCACTGAGTNCGTTGTAGACGTNTCATGGCTGTATCT
CACCGAGCGTGCTATCTGAGATGTNTACGCACGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_g23.b1 MSMg01no451_g23.b1 CHROMAT_FILE:
MSMg01no451_g23.b1 PHD_FILE: MSMg01no451_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:41 2005
         (632 letters)



>mm_chr15_45008455_45009486
          Length = 1032

 Score = 1133 bits (586), Expect = 0.0
 Identities = 626/658 (95%), Gaps = 30/658 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttaatatagggagaaatagtgtaattatattataatctcaaaataataataa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaattcatttaataaagggagaaatagtgtaattatattataatctcaaaataataataa 234

                                                                       
Query: 65  aaaa-ccttaaatgttctatttcaggttgctgtatttttttcttcctacaagatttcatc 123
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 235 aaaaaccttaaatgttctatttcaggttgctgtatttctttcttcctacaagatttcatc 294

                                                                       
Query: 124 aataacattgtttttctcaatgtcattttccctgaaattattcacca------------- 170
           |||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct: 295 aataacattgtttttctcaatgtcattttccctgaaattattcaccagatttatatcaac 354

                                                                       
Query: 171 ----------------caaggtccattcatgccattacaataaatcagtgtaacctcaga 214
                           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tctattgtctcttccacaaggtccattcatgccattacaataaatcagtgtaacctcaga 414

                                                                       
Query: 215 tcatttaatttattagtatcataatgttttgtttaagatttccttctggacatagtctta 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tcatttaatttattagtatcataatgttttgtttaagatttccttctggacatagtctta 474

                                                                       
Query: 275 acaagacaaggaaagttatagtgtcctaatatctgaaatataatatggtataatgcaatc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 acaagacaaggaaagttatagtgtcctaatatctgaaatataatatggtataatgcaatc 534

                                                                       
Query: 335 ttactgatttgaaattaatgcatattttatatgtttctcttggatcagttatgaaaataa 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttactgatttgaaattaatgcatattttatatgtttctcttggatcagttatgaaaataa 594

                                                                       
Query: 395 aaatttactgcatattctctttctcttactccttttctctgtactaagcaatgattcaag 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aaatttactgcatattctctttctcttactccttttctctgtactaagcaatgattcaag 654

                                                                       
Query: 455 aaacagggacccaacatatacactgtttctaatcatgaaacgaatgaaacaaaaaagtac 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aaacagggacccaacatatacactgtttctaatcatgaaacgaatgaaacaaaaaagtac 714

                                                                       
Query: 515 attttcatgcttatctttggtcattgaaggaacaaatatgattaaaataaattataatga 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 attttcatgcttatctttggtcattgaaggaacaaatatgattaaaataaattataatga 774

                                                                     
Query: 575 attttcttctccataaattccataatttcattagggatattataaattttccaatgtg 632
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 attttcttctccataaattccataatttcattagggatattataaattttccaatgtg 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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