Query= MSMg01no451_k01.b1 MSMg01no451_k01.b1 CHROMAT_FILE:
MSMg01no451_k01.b1 PHD_FILE: MSMg01no451_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:56 2005
(619 letters)
>mm_chr15_37460506_37461521
Length = 1016
Score = 1104 bits (571), Expect = 0.0
Identities = 602/615 (97%), Gaps = 7/615 (1%)
Strand = Plus / Plus
Query: 7 gaattctccc--attttcgtttgatcacaaaaccccattttcttctgatggatcttatga 64
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 207 gaattctcccaaattt--gtttgatcacaaaaccccatttacttctgatggatcttatga 264
Query: 65 tactagcagtttggggactaacatcttaggaaatgctaaactagatgagaagatggaagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactagcagtttggggactaacatcttaggaaatgctaaactagatgagaagatggaagt 324
Query: 125 taggacaaagaaggaaagaaataataaatgaaaactctgagatctcttggagctgcatgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggacaaagaaggaaagaaataataaatgaaaactctgagatctcttggagctgcatgc 384
Query: 185 aacttgtgaaattgtcatgtaatattcatggtctaaaaggagaggggcatatatgacatt 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacttgtgaaattgttatgtaatattcatggtctaaaaggagaggggcatatatgacatt 444
Query: 245 ctaacataactataaaaataataatgtatagatagttagtatgattaaaataaaaaacaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctaacataactataaaaataataatgtatagatagttagtatgattaaaataaaaaacaa 504
Query: 305 agcttggtatcatcattcacagtctaccctggttctctaatctggttcaactttgcaaat 364
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 505 agcttggtatcatcattcacagtctaccctggctctctaatctagttcaactttgcaaat 564
Query: 365 gaatatatagtatactatataatatgttgagaactaatacaaacattaagagtatgaatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaatatatagtatactatataatatgttgagaactaatacaaacattaagagtatgaatc 624
Query: 425 atcccaccctggcttggatttactgctaagggactaaacctactgatgccctgtgtcccc 484
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 atcccaccctggcttgg---tactgctaagggactaaacctactgatgctctgtgtcccc 681
Query: 485 ttctactcataaaaaaaacctgacaccacctgtatgtattccctgaggacacctgggatc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttctactcataaaaaaaacctgacaccacctgtatgtattccctgaggacacctgggatc 741
Query: 545 ttctaggtgctcaggttaccagtgaccatcacaggcaccacaccaaacactaatctctac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttctaggtgctcaggttaccagtgaccatcacaggcaccacaccaaacactaatctctac 801
Query: 605 aacaactctacgaag 619
|||||||||| ||||
Sbjct: 802 aacaactctatgaag 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1016
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1006
Effective search space: 612654
Effective search space used: 612654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_k01.g1 MSMg01no451_k01.g1 CHROMAT_FILE:
MSMg01no451_k01.g1 PHD_FILE: MSMg01no451_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:56 2005
(621 letters)
>mm_chr15_37641027_37642047
Length = 1021
Score = 1147 bits (593), Expect = 0.0
Identities = 614/621 (98%)
Strand = Plus / Minus
Query: 1 cacacagtggggtgctgtgtccttaagagcaggtggtttatgtggtccatccttttgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 cacacagtggggtgctgtgtccttaagagcaggtggtttatgtggtccatccttttgaat 762
Query: 61 gggcagagctagtttagtagctatctagctaagtgccatgcttgccagcacacagcatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gggcagagctagtttagtagctatctagctaagtgccatgcttgccagcacacagcatgc 702
Query: 121 tcatccagccctacagcagtgggtctagctcgacagcccgtcagtcgtcagtccacatcc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 701 tcatccagccctacagcagtgggtcttgctcgacagcccgtcagtcgtcagtccacatcc 642
Query: 181 caagctggttaacaggtgagggtactttcagcttccttagagagtggcagactgcatcct 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caagctagttaacaggtgagggtactttcagcttccttagagagtggcagactgcatcct 582
Query: 241 agagtggttgtaaaatctttcctcaaaacagacatgtgaaaagctcctgtgtataactct 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 581 agagtggttgtaaaatctttcctcaaaacagacatgcgaaaagctcctgtgtataactct 522
Query: 301 tcagtacttggagaattgcaatacttccttccatttttttcttgtggactatcatgggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tcagtacttggagaattgcaatacttccttccatttttttcttgtggactatcatgggga 462
Query: 361 gtgtgaattagtcaatactctccaaagcaatagaaagacaggactgttgcaccatggtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtgtgaattagtcaatactctccaaagcaatagaaagacaggactgttgcaccatggtgg 402
Query: 421 tgtgtactgtcacctctcagcatccagggcgctggctcaaggcctcctgtagacaccatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgtgtactgtcacctctcagcatccagggcgctggctcaaggcctcctgtagacaccatg 342
Query: 481 taaatgtgaacacagaacctacaccctgtcctccaatacactttgtcatttacattattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 taaatgtgaacacagaacctacaccctgtcctccaatacactttgtcatttacattattt 282
Query: 541 atagtatttaaaatgctgtaaacgcttcttatactgtattattttaagagtaatgacact 600
||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 281 atagtatttaaaatgctataaacatttcttatactgtattatttaaagagtaatgacact 222
Query: 601 aaaatgtttatatttttggtt 621
|||||||||||||||||||||
Sbjct: 221 aaaatgtttatatttttggtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
