BAC Information

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BAC

Clone NameMSMg01-452J24
Chromosome15 (Build37)
Map Location 53,025,486 - 53,025,973
singlet/doubletsinglet
Overlap geneExt1
Upstream geneLOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745
Downstream geneSamd12, EG665097, EG621631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452J24.T7 (MSMg01no452_j24.b1)MSMg01-452J24.TJ (MSMg01no452_j24.g1)
ACCAG539833AG539834
length757769
length of high quality
(start - end)
667 (47 - 713)605 (78 - 682)
definitionCHROMAT_FILE: MSMg01no452_j24.b1 PHD_FILE: MSMg01no452_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:14 2005CHROMAT_FILE: MSMg01no452_j24.g1 PHD_FILE: MSMg01no452_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTAAAACTGGACTTAGAGACCATTTTGAACTGCCACATAAATG
CTGACCATCTGCCAGAACAACCAGTGTTCTTAACCACTGTACCATCTTTC
TCCAGCCCCCTCTTGATACTTTTTAAACAATAGCTTTCCATTTTTTTGAA
TATTATATTGCTCACAATATAAATACAAAATATAATGTATAAATGAGTAT
AAAAATACATGTATATAATACTTTCCAATCACACCCATCTCCCTACCCTC
TTGTATATTCCTCTTCCTCCCATGAATCTTCTCTGATCACACCAAGTCCC
CATTGTACTTTCATATCTCTTTTGTTTTGCTTTGGATTTTGCTTTGTATT
GTACAGGACTTAACTAGGCCACCTGTGTGGACACAGGTTTAATGCTATCT
ATCGACTGGAGAAGAAGTAATTTCCAAATGGCTATATCACTAAATCAGTA
AAAACTACCCCCCTCCCCAATCGCTCAATTGCTAATAGCTCCCCTGGAGG
GGAGGGCAACATTGGTCTCCTCCCCCCGACCCACTCATGACTAAATGTGT
GTGGTCTTAGTCCTATGCAGACCCCTATGCATGCAAGCACAACTGCTGTG
CATTCATAGCCAGCATAATGACCCTCTACCCCCTGAGTTTACTTTCTTTC
CACCTCTCTCTGTGATAGGACCAGGGTGGTATGAGGATCCCATTTTACGA
GCACTCA
NNCCCATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGACTTCCCAACATGCTCCA
TTCATGCAGTAGTTTACTGTCAGAAGTTTTCTGTTCTAGGAAGCCCACTT
ACATGAATGCATGTTGATTTGTGAATGTGCATTATAATTTATGGTTATTT
ATTGGGAGCTATTTAGTTTTGCTTATAATATGCATTATTACAGATATTGT
TGAGGTTATTATACTGTTATTAATTTCCACACTTTTACAAGTAGTTTGAT
AGGTTAGATTGTCAGATTTCTCTCCAGAAAAGATCTTCCAATTCATTTGC
TTTGTCTGTTTGTTATTTGTTTTTGGAGATAGGGCCTTACTATGTATCTC
TGGCTGTCCTGGAACTCACTATGTACAACAGACTGAACTCAAACTCACAG
AGATCCTCCTGCCTTTGCCTCCTGGTAGGATTAAAGGCATGTGCCACTTG
CGATTCACTTTCTTAACCTGCAGCATATAAATGAGCCCCCAGTGGTAAAA
GTTAGGCAGTAGAGATGTAAGTAAAACCATCTTTTGAAGTTGCCTAAGTA
AATATTTCTGAGAAAACAATTTGTAAGCAGGAGAGTGGTCAGGCTTTCTA
CTTGGACTGCATGGGGCTTCTACACAAATGATGTTGTTGATAAATATTTA
AAAGAGTTGCTAGAAAATTGGACATGGACTAGTCTATTACAGTGTAAATG
TATACACTGATTAGATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_j24.g1 MSMg01no452_j24.g1 CHROMAT_FILE:
MSMg01no452_j24.g1 PHD_FILE: MSMg01no452_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:14 2005
         (605 letters)



>mm_chr15_53025486_53026490
          Length = 1005

 Score =  936 bits (484), Expect = 0.0
 Identities = 487/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggacttcccaacatgctccattcatgcagtagtttactgtcagaagttttctgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcaggacttcccaacatgctccattcatgcagtagtttactgtcagaagttttctgttct 429

                                                                       
Query: 61  aggaagcccacttacatgaatgcatgttgatttgtgaatgtgcattataatttatggtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggaagcccacttacatgaatgcatgttgatttgtgaatgtgcattataatttatggtta 369

                                                                       
Query: 121 tttattgggagctatttagttttgcttataatatgcattattacagatattgttgaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tttattgggagctatttagttttgcttataatatgcattattacagatattgttgaggtt 309

                                                                       
Query: 181 attatactgttattaatttccacacttttacaagtagtttgataggttagattgtcagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 attatactgttattaatttccacacttttacaagtagtttgataggttagattgtcagat 249

                                                                       
Query: 241 ttctctccagaaaagatcttccaattcatttgctttgtctgtttgttatttgtttttgga 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 248 ttctctccagaaaagatcttccaattcatttgctttgtctgcttgttatttgtttttgga 189

                                                                       
Query: 301 gatagggccttactatgtatctctggctgtcctggaactcactatgtacaacagactgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gatagggccttactatgtatctctggctgtcctggaactcactatgtacaacagactgaa 129

                                                                       
Query: 361 ctcaaactcacagagatcctcctgcctttgcctcctggtaggattaaaggcatgtgccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ctcaaactcacagagatcctcctgcctttgcctcctggtaggattaaaggcatgtgccac 69

                                                                       
Query: 421 ttgcgattcactttcttaacctgcagcatataaatgagcccccagtggtaaaagttaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  ttgcgattcactttcttaacctgcagcatataaatgagcccccagtggtaaaagttaggc 9

                   
Query: 481 agtagaga 488
           ||||||||
Sbjct: 8   agtagaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)