Query= MSMg01no453_b09.b1 MSMg01no453_b09.b1 CHROMAT_FILE:
MSMg01no453_b09.b1 PHD_FILE: MSMg01no453_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:50 2005
(663 letters)
>mm_chr15_73637439_73638501
Length = 1063
Score = 1108 bits (573), Expect = 0.0
Identities = 637/669 (95%), Gaps = 20/669 (2%)
Strand = Plus / Plus
Query: 5 gaattctatcctcattctacaaagccagtattatcctgatgtccaagttggttatctttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatcctcattctacaaagccagtattatcctgatgtccaagttggttatctttc 264
Query: 65 acactgttgtgacacagaatctgacaaagagaactcagtggaagcttagctcaggttcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acactgttgtgacacagaatctgacaaagagaactcagtggaagcttagctcaggttcag 324
Query: 125 tttgagaggggatagtcttcatgacagatcttgtgggtggattcttaacatcttgatgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgagaggggatagtcttcatgacagatcttgtgggtggattcttaacatcttgatgtg 384
Query: 185 ttagaaagcagagagaacttgagatagtgtaagtcaagtctctaattttcaaggtctgct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttagaaagcagagagaacttgagatagtgtaagtcaagtctctaattttcaaggtctgct 444
Query: 245 ttccagtgccccctttctttaacaaagccctaccaggttacaagtgttcaaacacatgaa 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 ttccagtgccccctttctttaacaaagccccaccaggttacaagtgttcaaacacatgaa 504
Query: 305 tctgtgaggggcacttgacacttaaaacaatacctatgtcatataaa----------cac 354
|||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 cctgtgaggggcacttgacacttaaaacaatacctatgtcatataaaagcatgaacacac 564
Query: 355 acacacacacacacacacacacacacacagagagagagagagagagagagagagagacag 414
||||||||||||||||||||||||||||| | | | | | | | ||||||||||||| |
Sbjct: 565 acacacacacacacacacacacacacacacacacacacacacacagagagagagaga--g 622
Query: 415 agacagagacagagacagagacagagacagagacagagacagagatagagaggcaagagg 474
||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 623 aga--gagacagagacagagacagagacagcgacagagacagaga------ggcaagagg 674
Query: 475 cagagagaaaaactttcagtaaaatactatcagattgtctgtgtcacagcgctccatacc 534
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 675 cagagagaaaaactttcagtaaaatactatcagattgtctgtgtcacagtgctccatacc 734
Query: 535 caaataccattggaagagaactggtctcccaggagtgtggacaagcctgtgagcacaggt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 caaataccattggaagagaactggtctcccaggagtgtggacaagcctgtgagcacaggt 794
Query: 595 aagaccaccacttctgctcaaattcctggcccaagagggaccagcccagagccattggga 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aagaccaccacttctgctcaaattcctggcccaagagggaccagcccagagccattggga 854
Query: 655 cacaggaac 663
|||||||||
Sbjct: 855 cacaggaac 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_b09.g1 MSMg01no453_b09.g1 CHROMAT_FILE:
MSMg01no453_b09.g1 PHD_FILE: MSMg01no453_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:50 2005
(622 letters)
>mm_chr15_73812031_73813046
Length = 1016
Score = 1168 bits (604), Expect = 0.0
Identities = 615/622 (98%), Gaps = 6/622 (0%)
Strand = Plus / Minus
Query: 1 aataaagaagctgagtaacacttaaaataataatgaagcccggggttgctgcaactcccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aataaagaagctgagtaacacttaaaataataatgaagcccggggttgctgcaactcccg 757
Query: 61 gctggctctgcggccaggctgccttgccgccatgatcaatcttcattttcacaccgggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gctggctctgcggccaggctgccttgccgccatgatcaatcttcattttcacaccgggtg 697
Query: 121 ccagacagctctgcagggtggggctggccggaagccctggggaattcacaggccaccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ccagacagctctgcagggtggggctggccggaagccctggggaattcacaggccaccagg 637
Query: 181 atgcccgggcactcacctgctactctgagcagcgggagagagactcccaggccatgctga 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 636 atgcccgggcactcacctgctactctgagcagcgggagagag------aggccatgctga 583
Query: 241 acctaacctccctcacacaccaagtcactccacatcgcagtaccccatcacttactacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acctaacctccctcacacaccaagtcactccacatcgcagtaccccatcacttactacac 523
Query: 301 ctgcttccctgtgcctggtcccgtgctgttccgtccacccagtgctagcatcaaggaaac 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctgcttccctgtgcctggacccgtgctgttccgtccacccagtgctagcatcaaggaaac 463
Query: 361 tcctatctactcctcaaaacccagctcagggttcagataagcctcactagttctgtagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcctatctactcctcaaaacccagctcagggttcagataagcctcactagttctgtagcc 403
Query: 421 tttggacagagcagtgtgctcagaggggtttgtgggttggaacccctcggctgctttcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttggacagagcagtgtgctcagaggggtttgtgggttggaacccctcggctgctttcct 343
Query: 481 ctatttttgccaccatgtgttaactagctaagcacactgcaataggtatgcagagacaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctatttttgccaccatgtgttaactagctaagcacactgcaataggtatgcagagacaag 283
Query: 541 aggctcgcccaggatccagagatgcagcagctgaatccagaaatagctgggactgtctgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aggctcgcccaggatccagagatgcagcagctgaatccagaaatagctgggactgtctgc 223
Query: 601 tactacccagaagccctttcgg 622
||||||||||||||||||||||
Sbjct: 222 tactacccagaagccctttcgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1016
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1006
Effective search space: 615672
Effective search space used: 615672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
