Query= MSMg01no454_k17.b1 MSMg01no454_k17.b1 CHROMAT_FILE:
MSMg01no454_k17.b1 PHD_FILE: MSMg01no454_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:56 2005
(467 letters)
>mm_chr15_50421030_50421896
Length = 867
Score = 714 bits (369), Expect = 0.0
Identities = 406/427 (95%), Gaps = 16/427 (3%)
Strand = Plus / Minus
Query: 54 tatatatatatatatatatatagtagatctacttaaacaataattccttgcaatataggc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tatatatatatatatatatatagtagatctacttaaacaataattccttgcaatataggc 559
Query: 114 aaggactaaataatagttacatgagaatttacttataagtttgtaagcttatagtcttca 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaggactaaataatagttacatgagaatttacttataagtttgtaagcttatagtcttca 499
Query: 174 tagtacctatggcatcttaaaaatagtaaattagcaagtgtatttataatgctactctt- 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 498 tagtacctatggcatcttaaaaatagtaaattagcaagtgtatttataatgctactccta 439
Query: 233 --tatttatttgtcccaaattcctgaagaaacactagacttatctttttgagattttcta 290
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggca---atttgtcccaaattcctgaagaaacactagacttatctttttgagattttcta 382
Query: 291 aaactagtatgttctaaagacagtatccctcttctgacatatccattatttggagggaag 350
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactaatatgttctaaagacagtatccctcttctgacatatccattatttggagggaag 322
Query: 351 attatcagatataaagttgaacacatgacatttagtacttgtccaatgacccgtccagca 410
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatcagatataaaattgaacacatgacatttagtacttgtccaatgacccgtccagca 262
Query: 411 ggtccagtta----------tcaaggggaccttctcctaagaaccaattggcgggtagag 460
|||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ggtccagttattcaagggtctcaaggggaccttctcctaagaaccaattggggggtagag 202
Query: 461 agagacg 467
|||||||
Sbjct: 201 agagacg 195
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_k17.g1 MSMg01no454_k17.g1 CHROMAT_FILE:
MSMg01no454_k17.g1 PHD_FILE: MSMg01no454_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:56 2005
(481 letters)
>mm_chr15_50277824_50278704
Length = 881
Score = 830 bits (429), Expect = 0.0
Identities = 474/501 (94%), Gaps = 22/501 (4%)
Strand = Plus / Plus
Query: 1 tacaggtcccattttgtgatgcttccatgatggctttcaattactccatatgctggagtg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacaggtcccattctgtgatgcttccatgatggctttcaattactccatatgctggagtg 240
Query: 61 tgggcacccaaatgatagcaccagctaagtgatagctgtgagcatgggtatgcag---ac 117
||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 241 tgggcacccaagtgatagcaccagctaagtgatagctgtgagcatgagtatgcagaacac 300
Query: 118 c--------------ac---cttcagacagtgggaataaccatggacttttcatcttctc 160
| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 301 ctacaggaacaagcaacatgcttcagatagtgggaataaccatggacttttcatcttctc 360
Query: 161 tttcaaacattctgctagcatatcccattgtcacactgatcaaatctaaataggtaccag 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttcaaacattctgctagcatatcccattgtcacactgatcaaatctaaataggtaccag 420
Query: 221 ttgacacatgagtgtgaaaagtgtttattatgtagtcaaactctctgcaccatgagtgaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttgacacatgagtgtgaaaagtgtttattatgtagtcaaactctctgcaccatgagtgaa 480
Query: 281 gtaggcaaagataattcagagagccaccatgtctaagtaggtcatttatattatgttaaa 340
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 481 gtaggcaaagataattcagagagccaccatgtctaagtaggtcatgtatattatgttaaa 540
Query: 341 acactagatggggttgagcaggaacatatgattagcatttaggaagtgataaaaaaaatt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acactagatggggttgagcaggaacatatgattagcatttaggaagtgataaaaaaaatt 600
Query: 401 agtaaattcttcatactcaattttgaaatgaaagaaaagagggaagaaggtagagagaga 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agtaaattcttcatactcaattttgaaatgaaagaaaagagggaagaaggtagagagaga 660
Query: 461 gagaaggaagggggaaagaag 481
|| |||||||||||||||||
Sbjct: 661 ga--aggaagggggaaagaag 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
