BAC Information

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BAC

Clone NameMSMg01-454P06
Chromosome15 (Build37)
Map Location 47,999,283 - 47,999,692
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC665130, LOC100039485, LOC100039493
Downstream geneEG665146, LOC100039600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454P06.T7 (MSMg01no454_p06.b1)MSMg01-454P06.TJ (MSMg01no454_p06.g1)
ACCAG541607AG541608
length765776
length of high quality
(start - end)
484 (51 - 534)386 (77 - 462)
definitionCHROMAT_FILE: MSMg01no454_p06.b1 PHD_FILE: MSMg01no454_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:19 2005CHROMAT_FILE: MSMg01no454_p06.g1 PHD_FILE: MSMg01no454_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTCACCTCTGTACTCCATTTTTAACAGGATTATTTG
GTTTTTCTAAAGTCATACATTTTGAGAGAACTTCTTTCTTATGGCACTAC
TTGAGTTCTTTGTATATATTGGATATTAGCCCTCTATCTGGTTTAGGATT
GGTAAAGATCGTTTCCAAATTTTTTGGTTGCCTTTTGGTCTTATTGACAG
TGTCCTTTGCCTTACACAAGTGTTGCAATTTTATGAGGTTCCACTTGTTA
ATTCTTGATCTTACAGTACTTGTCACTGGTGTTCTGTACAAAAAAAAATT
TCCCCTGTGCCCATATATCAAACTGATCATCCGCCATGATCTATAGACTT
CATCCCAAGGATGTAGGGATGGTTGAATATACAGAAATCTATTAACATAA
TCCACTATATACACAAACTCTAAGAAAAAAAAACCAACCACATGATCATC
TCTTTAGATGCTGAGAAAGCATTTGACAAAATACAGCATTCATTCTTGAT
AAAAGTCTTGGAAAGTCCCGTAATTCAAGTCCCCTTCCTTAAACTTATAA
AAGGAATTTACGGTCAAACCCGCAGCCCAATATTAAACCTAAATGGAAAA
GAATCTTTGTAGGAATTCCCTCTAAAACCAGGGAATAAAAAAAGAAAGGG
TTCTTTTTCTTCCCACCCTATTTCATGGTGTCTAGTTGGGGGTCCCCTTC
TCCCCCTCTTTTATN
NCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATTCTTCAACCTTGCACTAGAA
GAATCCATTATGTTCAACTTCCAGTACGCTAAGTTTTATGAAGTACTAAA
CTCTTCCAGAGTCCAATCAACAGAGACATAAAAAGGAAGACACTTAAGTT
CTATCCATGAGACCCATAGTGGAAGTAGAGAACCCATACTTTCAGGTTTT
TTATGTGATAGGTTTTAGCGCGCGCGCGCACACACACACACACACACACA
CATGTCTAAAATAAATGTATATTTTGTTTAACAAAGCTGAAGATAATAAA
TGAGAAGAATTCTGAAATATGCAAGAGGGTAGAAAATAATAAAGATATAT
TTAAAGGGTGAACTACTATATGTTCCTATAATTCTCATAAGTGCTCAAAA
AATTAAATTACAAACTTATAAAGATATCTTCATTCTTATGTTCACTGAAG
CATTATTCAGTTGCCAAACATAGAAACAACCTAACAACTTTATATTACCG
AGTGGAAGGAAAAGAAAACCCTAACCTATAGATGCCTACCGGGGAAAATT
ATTTCCATTTTATTAAGAATCTTGCGCTTTGGAAAAATAAAAAACCCCTT
TTGTTTTACCCGATATTCCTGTTTGGGATAAATTTAAACCCCCGAACTCG
TGATTTTCGGGGGACCTTTTTTTATAAATTTATTTTTTTCTTCCGCCTCA
TCATAATAAACTAAAATTTTACTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_p06.g1 MSMg01no454_p06.g1 CHROMAT_FILE:
MSMg01no454_p06.g1 PHD_FILE: MSMg01no454_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:19 2005
         (386 letters)



>mm_chr15_47999107_47999892
          Length = 786

 Score =  630 bits (326), Expect = 0.0
 Identities = 379/410 (92%), Gaps = 24/410 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattcttcaaccttgcactagaagaatccattatgttcaacttccagtacgctaagttt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttattcttcaatcttgcactagaagaatccattatgttcaacttccagtacgctaagttt 236

                                                                       
Query: 61  tatgaagtactaaactcttccagagtccaatcaacagagacataaaaaggaagacactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tatgaagtactaaactcttccagagtccaatcaacagagacataaaaaggaagacactta 296

                                                                       
Query: 121 agttctatccatgagacccatagtggaagtagagaacccatactttcaggttttttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agttctatccatgagacccatagtggaagtagagaacccatactttcaggttttttatgt 356

                                                                       
Query: 181 gataggtttta----gc----gcg--cgcgcgcacacacacacacacacacacacat--- 227
           ||| |||||||    ||    |||  ||||||||||||||||||||||||||||||    
Sbjct: 357 gatgggttttacagagccatggcgtgcgcgcgcacacacacacacacacacacacacaca 416

                                                                       
Query: 228 -----------gtctaaaataaatgtatattttgtttaacaaagctgaagataataaatg 276
                      |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 417 cacacacacaggtctaaaataaatgcatattttgtttaacaaagctgaagataataaatg 476

                                                                       
Query: 277 agaagaattctgaaatatgcaagagggtagaaaataataaagatatatttaaagggtgaa 336
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 477 agaagtattctgaaatatgcaagagggtagaaaataataaagatatatttaaaggttgaa 536

                                                             
Query: 337 ctactatatgttcctataattctcataagtgctcaaaaaattaaattaca 386
           ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 537 ctactatatgttcctataattctcataagtgctgaaaaaattaaattaca 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)