BAC Information

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BAC

Clone NameMSMg01-454P17
Chromosome15 (Build37)
Map Location 33,412,229 - 33,412,662
singlet/doubletsinglet
Overlap genePgcp
Upstream geneSema5a, LOC100040962, Sdc2, 1700084J12Rik
Downstream geneTspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454P17.T7 (MSMg01no454_p17.b1)MSMg01-454P17.TJ (MSMg01no454_p17.g1)
ACCAG541629AG541630
length759766
length of high quality
(start - end)
536 (45 - 580)434 (75 - 508)
definitionCHROMAT_FILE: MSMg01no454_p17.b1 PHD_FILE: MSMg01no454_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:21 2005CHROMAT_FILE: MSMg01no454_p17.g1 PHD_FILE: MSMg01no454_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGGTTCCTTTATTTTATATCTTTATTTCTTTCTTGAATCATTCT
GCTTTCAGTACATGTTCAGTTCCCATGTGTTTGTAAGTTTTCTGTTGTTG
TTGATCTCTGGCAGTCTGATAGGATATAGGGAGTTATTTCAGTTTTCTTG
TAGCTACTGAGATTTTCTTTGTGACTTGAGTATATGGTCAGTTTTGGATA
AAGTTCTGTGAGGTGCTGAGAAGAAAGTATGTTCTGTATTTGGTTGAAAT
GTTCTGTAGATATTTGTTAGATCAAATTGGAGTCTGTTAGCTACAGTATT
TCTCTGTTTAGTTTTTCTTTGGATAGCCTGTCCATTGGTGAAAGTGGAGA
ATTCAAATCTCCCACTATTATCCTGTGAACATCAATGTGTGATTTAACCT
TTAGTAGTGTTTCTTTTACAAATGTAAAATGTGTTTGAGGCATAGATGTT
AAGAATTGAGACATCATCTTAGTAGAGATTTTCCTTTGCTGAGTATGAAA
TGTCTTCCCTCATCTTTTTTTTTTCTTTTCACTAATTTTAGTTTGAAGTC
TATTTTTGTCGGCATTAAAATGGTCCCCCCTCCTTTGTTACGCTTATTTG
TTTTTTAAAAACCCCTTTTGATCCACTTTTTTCTGGGGCATTGTTCTATG
TTTTGAAATTGAAAAGTTTTTTTTTGTTTGCTCTAAAAATATACCAATCC
TTTTTTTCC
GATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGACCATGTTCCAAAAGCAGATGG
AAAGCCTGGGTCAAACTTCATGGACAAGGTGATACTTTTCCAAGAAAAAG
CCACTATTCTGGAAGTTCTGGAGAGTTGAGAATTATGTTTGTTTGTTTGT
TTTTGTTATGTTTGTTTACAGTATATTCCTAGGTCCTAGACAAGAGGAAC
CTTGAAATACACAACAAAGGAAGAAATGAATGAAGTGGCATTGATTTCTG
CATCCAAATACTGCTCTTGAAATATGTCAGTTTACAAGAGAGGAGCAAGG
TATACAAAGTTTAAAAGCATAAGGCAAATATACTCTACAGGTAGGCTGCT
CACAAATATCAAGTGTCCTTCCCAGTGTTTTATAGGCAATTACAAACCAT
TCCAGGTCTGAGATCAAAAGTGACCATAAAGTAACAAATGCCAATTGAAC
TACACTTGGCACTTGGCCTCTGCCTGGAAATAGTTCTTTCCCTCAGCTTC
TGGGATCTGAAGCTGTCAGCTCTCTTTGTGNCTTACTGGATGCTCTTTCT
CCATTTTTCTTTTACCAAGGACATCTGCCCTTGGGTATTGGATGGTCATA
AAAAATATTAAAAAACCTTGTATCCCCCAAGTCATGGTTTATTCTGCGGG
GATATGCACCCTTTTTATAGGAATCTTTCTTTTGGCGGAAACTCCCCCCC
TCAATTTCAAATTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_p17.g1 MSMg01no454_p17.g1 CHROMAT_FILE:
MSMg01no454_p17.g1 PHD_FILE: MSMg01no454_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:21 2005
         (434 letters)



>mm_chr15_33411886_33412719
          Length = 834

 Score =  801 bits (414), Expect = 0.0
 Identities = 429/434 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaccatgttccaaaagcagatggaaagcctgggtcaaacttcatggacaaggtgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 777 tcagaccatgttccaaaagcagatggaaagcctgggtcaaacttcatggacaaggggata 718

                                                                       
Query: 61  cttttccaagaaaaagccactattctggaagttctggagagttgagaattatgtttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cttttccaagaaaaagccactattctggaagttctggagagttgagaattatgtttgttt 658

                                                                       
Query: 121 gtttgtttttgttatgtttgtttacagtatattcctaggtcctagacaagaggaaccttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gtttgtttttgttatgtttgtttacagtatattcctaggtcctagacaagaggaaccttg 598

                                                                       
Query: 181 aaatacacaacaaaggaagaaatgaatgaagtggcattgatttctgcatccaaatactgc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 597 aaatacacaacaaaggaagaaatgaatgaagtgacattgatttctgcatccaaatactgc 538

                                                                       
Query: 241 tcttgaaatatgtcagtttacaagagaggagcaaggtatacaaagtttaaaagcataagg 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 537 tcttgaaatatgtcagtttacaagagaggagcaaggtatataaagtttaaaagcataagg 478

                                                                       
Query: 301 caaatatactctacaggtaggctgctcacaaatatcaagtgtccttcccagtgttttata 360
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 477 caaatacactctacaggtaggctgcccacaaatatcaagtgtccttcccagtgttttata 418

                                                                       
Query: 361 ggcaattacaaaccattccaggtctgagatcaaaagtgaccataaagtaacaaatgccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggcaattacaaaccattccaggtctgagatcaaaagtgaccataaagtaacaaatgccaa 358

                         
Query: 421 ttgaactacacttg 434
           ||||||||||||||
Sbjct: 357 ttgaactacacttg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)