BAC Information

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BAC

Clone NameMSMg01-455C21
Chromosome15 (Build37)
Map Location 102,034,794 - 102,035,033
singlet/doubletsinglet
Overlap genenone
Upstream geneAcvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad
Downstream geneZfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455C21.T7 (MSMg01no455_c21.b1)MSMg01-455C21.TJ (MSMg01no455_c21.g1)
ACCAG541781AG541782
length800770
length of high quality
(start - end)		164 (74 - 237)240 (77 - 316)
definitionCHROMAT_FILE: MSMg01no455_c21.b1 PHD_FILE: MSMg01no455_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:37 2005CHROMAT_FILE: MSMg01no455_c21.g1 PHD_FILE: MSMg01no455_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTTCTTGCGAAGACCAGAATCACTTCACTGCTGACCCTAACTT
CTGCCTGCTTTGCTAGCCCTCTGAGCCCTCTCCTTGGACCATCAGTTTGT
GTCCAGGTCTATTTATTTTTTATTTTATATTATTATTATTATTTATTCTA
CTGTTATTTAGTGGTGGTGGTGGTGGTGGTGTGTNTNNTTNNNNNTTTTT
TTNTNNTTCTTNTNCNNNNTTTTTTTCTTCTTTTTTTTTTTTCCCTCCCC
CCCCTTCCTTTTTTTTTTCCCCCCCCCCCCCCTCCTTCCCCTTTTTCTTT
TTCCCCCCCCCCTCTTTCTTTCTTCTTCTTCTTTTCTCTTCCCTTTTTTT
TTTTTTTCCCCCCCCCCCTTCTACCCTTTTCCTTCTCCCTCTTTCTTTCT
CCCTTTCCCCTTCCTTTTTCCCCTTTCCTTTTTCTTTTCCCTCTTCTTTC
TTTTCCCCTTTTCTCTCCCCTTTCCCCTTTTCCCCTTTCTTTTTTTTCTT
TTCTCCTCCCTCCTTACCCTTCTTTTCCTCTCCCTTTTTTTTTTTCCCTC
TTCTTCCTCCTCTCCCTTTCTTTCTCCCCTTTCTTTTTTCCTCTCACTCT
CCCCTTTCCCTTCTTTCTTCCCCTTTCTTCCTTTATTTTTTTTTTCCATT
TCTTCACCCCTCTATATCTATACAAATTCTCTCTTTTTCTCATTCCTTTA
ATACAACCCTTTACCACAACATACTCTCTCTTTTCAAATTTTTTATCTCC


TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGGTGAAGCTCTAGGTCTGTT
CCAGAAACCTGAAACCAGAAAGGGAGATGTGGCCCTTAGGTGTAACATCT
TCAGGCCAAACAACGATCGAAGCTCCCTCAACTTATTTTGCTGGGCGTTC
TGAAGCTCAAAAGGAGGACATGAGTCGAGAGCTTTCTTTCTAGGTCAGTA
GAAGAAACTGGCCTCCTGGGCCGAAAGAGCAGCCAACGGGAGCAAAAGTA
AGTTGGGCCTCCTATATATGAGGATCTGCCAAGAGAGTAAGAGCTGGGAT
TTGCCATCTTAGGAACGGAAGAAGGGGGCGGAGGCCCTTTGGGGCTTTTG
TGCGGAGTGGGCCGGCCTGCAAAGCTGGCACTCCACAGACGAGGGCAGAA
CTGTGTTGGAAGGAAGCTCGGGGGGCCTCCGCCGAGCGCCGGGGTGGCTG
GCAATGCCCGTTCGTGATCGTCGCTCGGATTCCGCTCGATAGTTCGTAAA
ATTCACCTCTGCGGTAGCGTAGTCGTTTCTTTTTTTGTTCACCGCTATGC
CTGTTCTATGCTATTTTTTCCTTTACTGCGTACTATAAATTTAGCCTTTT
ACCTATCTTTTTCTTTTTTCGTCGCTCTTACTCCGTTTTTCTCCTTTTCT
CTTCTCCTCCTCCCAATAGCCTCTCCCCCCTAATTTCTCTATTCACGTTA
ACGCCTATCGATTATCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_c21.g1 MSMg01no455_c21.g1 CHROMAT_FILE:
MSMg01no455_c21.g1 PHD_FILE: MSMg01no455_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:37 2005
         (240 letters)



>mm_chr15_102034594_102035233
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttggtgaagctctaggtctgttccagaaacctgaaaccagaaagggagatgtggccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 tcttggtgaagctctaggtctgttccagaaacctgaaaccagaaagggagatgaggccct 381

                                                                       
Query: 61  taggtgtaacatcttcaggccaaacaacgatcgaagctccctcaacttattttgctgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taggtgtaacatcttcaggccaaacaacgatcgaagctccctcaacttattttgctgggc 321

                                                                       
Query: 121 gttctgaagctcaaaaggaggacatgagtcgagagctttctttctaggtcagtagaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttctgaagctcaaaaggaggacatgagtcgagagctttctttctaggtcagtagaagaa 261

                                                                       
Query: 181 actggcctcctgggccgaaagagcagccaacgggagcaaaagtaagttgggcctcctata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 actggcctcctgggccgaaagagcagccaacgggagcaaaagtaagttgggcctcctata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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