BAC Information

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BAC

Clone NameMSMg01-456C12
Chromosome15 (Build37)
Map Location 15,912,055 - 15,912,418
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040024, LOC100040033, LOC100040046, EG239341
Downstream geneLOC100040087, LOC624183, LOC100040119, Cdh9
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456C12.T7 (MSMg01no456_c12.b1)MSMg01-456C12.TJ (MSMg01no456_c12.g1)
ACCAG542525AG542526
length7291,577
length of high quality
(start - end)
335 (320 - 654)---
definitionCHROMAT_FILE: MSMg01no456_c12.b1 PHD_FILE: MSMg01no456_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:53 2005CHROMAT_FILE: MSMg01no456_c12.g1 PHD_FILE: MSMg01no456_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAGAGGATCCGCGG
AATTCCTATTTTCCTCACCATGAAGAGTTTGAAAACTATTACTTTAAATT
TATACTTGAATATTTTCAAGCTCTGTCTCTTTATGGTACTATTGTTATAT
GAATAATTGAACAAAGTCATCAGAAGGAAACATGTTACCTTCTGGGATAA
AAAGAGTGAAACGTAATGAAATGTATCTGGTAATGAAACTAAGAGCTGAG
TCACAGTAGTTTCTAGAGGGTTGATTGCCTGTGAAAGGAGAGTAAAGAAA
CAACTAAAACTTTATTTTTAGAGACTTCCAGCCAATTACTTCAAATATTC
TAAACCTATCTGTGAACATCTGACCACTTTCGGTTTTATAATTAGATCTT
ACCCATTTTGAGCATTTGGCATATGGAACAAAGAGTAACACAATTCACAT
TTAGACCAAAAGAGACTATTAAGTAAATAATTATATGTACATTGCCAGTT
ATGAGATCAGAACTCCCTAATTACATTAAGCATATTCTCAGATATATTCA
GTGAAATACATATTCTAATATATTATATATATATATATATAATCAAAGTC
AAAATTACTTTACATTTTTATTTAATTGGACTGGTTTATAGAATCTTTTT
TATATCCATGCATCTTTGGGTCAACTAATAGAGCTATATTCCACCTTCTT
CAGAAATTACTAGCCTACAGATATTAATN
AAAGATAAATATAGGGGGCGCGGNCTCCGNTGGTGGCTGTGCGCGGTCTC
TCCTCCGCATTCGGTGGGGCGCTTGGGACACTGTGGTTCCTTTTCCTCAC
GCTGTGTGTACAACCTTTGTTTCTTTTTGTATATACTCTCTAGCTTTGCG
CGGGCACAGCTGTAGTGCGGTCCGTGCACTTCGTTGTCAGTACACTTTAT
CTCATTTTTTCACAGCGACTAACGGCTCGAGCTGTCGAAAATTTTTGCCC
TGGCGCTCATATCGCATCCCTATGATGCTGCTGTCTTGTGTCGTCGCGAA
TGTAGCGACGCCTATTATCCACATATCACCTACATATCCATAAACAAATT
TCTACACATCATTCCATTGAACACTATCCCAACAGCGCGCGTTGTGGGGA
GCTCGAGCCCCGATTCATATATTCACACTTGACACCCATGATCCTACTTA
CTTTCTCATACACCACTTCTTTTATATATTACTTGGTTTCGCTGCGTGGT
CTCCGACGCAGTACCGCGCTGCGCTGCACACTATACATATGTAACACAGA
TGAATGGTGTCGGAGTCTATCCATATATGACGTTTATCACCAGTGCGCAC
TCATTATTATATTACACTTTATCATCTATACCACCATATATAATGCACAT
GCACTACTCTATACGCACAACATCATAACACTACAGTATGTTCATGCAGT
AGTGGATACGACGGCTGTGACCGCGCACGCGTACCGATTCGATCTGAGAT
GCCGTAATTCGANCGCCCGATTATCACGCATGACGAGCTGCAGCTCATGA
GAACGTCGGCGCGTGTATACGCACCTGACGAGCACTTCTATCCACCACTT
GCAGCATTGTTGGACACACACTGCTGCTCTGANGATTTGAGACGCATGCT
GCCGATTGGTAATAGGAAGGACGCTATGTCGATTCTATTCAGAGCACCTT
ATCCTCACCGTCCGCTACTATCTCTTATACACATTACACAGTCGCCACGC
CGTCGTGTGAGTGTAATATCAGCTGATATATGACCGCATATATATGCGGC
AGTGTTGACGACTTATCGAGAAGTAGCTANGATAACGAGGAGTAAGTGCT
CACTACGATATACGATATAAGTTACTGCGANCACGTACAGATATACTCTA
CGTTCGACGAGATATATGCATTNTGTCTGCAGATTGCTGTGTCGACTGCG
ACTGCTGCAGTCCAGTTTTTATGCACGTGTTGTCACGCATGTGTGTTGAC
ATGTGTGTACGCTATTATCCGCGGCACGCGAATGTGCACTGCTGAGTAGC
TCGACTCGCTGAGNGTATGGTAGAGGTTCGCGGCGTATCTCGTGATGTCT
GGTCTACTCGCGTGTACATAGCACGACGCGCGGTCGATCAGCTATGTGAC
TCGCGCGATGCGACTGCGCATGTCGTTCTCGTCTACGACGGCTTCATTTA
CAGATCNTATAGCATGTGTGCTCTCAATACTTCCAGTATCATCTCAATCT
CACACGTTCTGTCGTTGTCACCAATTGTATACGATTGCGCATATCATGTG
CTATGAGTACATGTATGGTGTTACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_c12.b1 MSMg01no456_c12.b1 CHROMAT_FILE:
MSMg01no456_c12.b1 PHD_FILE: MSMg01no456_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:53 2005
         (335 letters)



>mm_chr15_15911855_15912589
          Length = 735

 Score =  580 bits (300), Expect = e-170
 Identities = 334/364 (91%), Gaps = 29/364 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagacttccagccaattacttcaaatattctaaacctatctgtgaacatctgaccactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagacttccagccaattacttcaaatattctaaacctatctgtgaacatctgaccactt 260

                                                                       
Query: 61  tcggttttataattagatcttacccattttgagcatttggcatatggaacaaagagtaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcggttttataattagatcttacccattttgagcatttggcatatggaacaaagagtaac 320

                                                                       
Query: 121 acaattcacatttagaccaaaagagactattaagtaaataattatatgtacattgccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaattcacatttagaccaaaagagactattaagtaaataattatatgtacattgccagt 380

                                                                       
Query: 181 tatgagatcagaactccctaattacattaagcatattctcagatatattcagtgaaatac 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattagatcagaactccctaattacattaagcatattctcagatatattcagtgaaatac 440

                                                                       
Query: 241 atattctaatatat-----------------------------tatatatatatatatat 271
           ||||||||||||||                             |||||||||||||||||
Sbjct: 441 atattctaatatatatatatatatatatatatatatatatatatatatatatatatatat 500

                                                                       
Query: 272 aatcaaagtcaaaattactttacatttttatttaattggactggtttatagaatcttttt 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcaaagtcaaaattactttacatttttatttaattggactggtttatagaatcttttt 560

               
Query: 332 tata 335
           ||||
Sbjct: 561 tata 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)