Query= MSMg01no456_c21.b1 MSMg01no456_c21.b1 CHROMAT_FILE:
MSMg01no456_c21.b1 PHD_FILE: MSMg01no456_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:55 2005
(508 letters)
>mm_chr15_18398690_18399598
Length = 909
Score = 872 bits (451), Expect = 0.0
Identities = 493/509 (96%), Gaps = 6/509 (1%)
Strand = Plus / Plus
Query: 4 gaattcatctcata---tctattttgcagatactaggtggataatgcaaactctgaaggc 60
|||||||||||| | | |||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 gaattcatctcagaaaat--attttgcagatactaggtggataatgaaaactctgaaggc 261
Query: 61 taatttacttgattgctattagggaaacatggtaaccaactgagagaaagaggatgtgaa 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 262 taatttacttgattgctgttagggaaacatggtaaccaactgagagaaagaggacgtgaa 321
Query: 121 aaccttggactgcagtacacaatatcagagaaggtatttatagctgaaacggtaaggcag 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaccttggactgcagtccacaatatcagagaaggtatttatagctgaaacggtaaggcag 381
Query: 181 atatataactctatagcttccaggttaatgattttttt-attaggtattttctttattta 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 atatataactctatagcttccaggttaatgattttttttattaggtattttctttattta 441
Query: 240 catttcaaatgctctcccctttcctactttcctctcctaaaatcccctatccactccctc 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 catttcaaatgctctcccctttcctagtttcctctcctaaaatcccctatccactccctc 501
Query: 300 atcccctgctccccaacctaccttctcctgcttgctggccctggcattccagtatactgg 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atcccctgctccccaacccaccttctcctgcttgctggccctggcattccagtatactgg 561
Query: 360 gacatagaaccttcacaagaccaagggactctcctcccattgatgaccaactaggccatc 419
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 562 gacatagaaccttcacaagaccaagggactctcctcctattaatgaccaactaggccatc 621
Query: 420 ctctgctacatatgcagctagagacacaagtcacaccatgtgttttcattgattggacat 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctctgctacatatgcagctagagacacaagtcacaccatgtgttttcattgattggacag 681
Query: 480 agcacaggatccccaatgaaggagctaga 508
|||||||||||||||||||||||||||||
Sbjct: 682 agcacaggatccccaatgaaggagctaga 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_c21.g1 MSMg01no456_c21.g1 CHROMAT_FILE:
MSMg01no456_c21.g1 PHD_FILE: MSMg01no456_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:55 2005
(250 letters)
>mm_chr15_18577636_18578285
Length = 650
Score = 476 bits (246), Expect = e-139
Identities = 249/250 (99%)
Strand = Plus / Minus
Query: 1 ttgtatttatgttccaaagaaaatttctttcattgatactaaaagaaaaatatgagtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttgtatttatgttccaaagaaaatttctttcattgatactaaaagaaaaatatgagtata 357
Query: 61 atagagtttaatcttcaaaaagataaggaggactgagaaactgttagataaactaaccga 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atagagtttattcttcaaaaagataaggaggactgagaaactgttagataaactaaccga 297
Query: 121 atgaaaaaattgtccaaaatcaatgatattcaatctttaaaaggtcatactacacacctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atgaaaaaattgtccaaaatcaatgatattcaatctttaaaaggtcatactacacacctc 237
Query: 181 tgaattccatgtcatcattggggaatattttaaaagtatatatatatatatatatatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgaattccatgtcatcattggggaatattttaaaagtatatatatatatatatatatata 177
Query: 241 tatatatata 250
||||||||||
Sbjct: 176 tatatatata 167
Score = 66.5 bits (34), Expect = 2e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 217 tatatatatatatatatatatatatatatatata 250
||||||||||||||||||||||||||||||||||
Sbjct: 155 tatatatatatatatatatatatatatatatata 188
Score = 66.5 bits (34), Expect = 2e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 217 tatatatatatatatatatatatatatatatata 250
||||||||||||||||||||||||||||||||||
Sbjct: 157 tatatatatatatatatatatatatatatatata 190
Score = 66.5 bits (34), Expect = 2e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 217 tatatatatatatatatatatatatatatatata 250
||||||||||||||||||||||||||||||||||
Sbjct: 159 tatatatatatatatatatatatatatatatata 192
Score = 66.5 bits (34), Expect = 2e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 217 tatatatatatatatatatatatatatatatata 250
||||||||||||||||||||||||||||||||||
Sbjct: 161 tatatatatatatatatatatatatatatatata 194
Score = 66.5 bits (34), Expect = 2e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 217 tatatatatatatatatatatatatatatatata 250
||||||||||||||||||||||||||||||||||
Sbjct: 163 tatatatatatatatatatatatatatatatata 196
Score = 66.5 bits (34), Expect = 2e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 217 tatatatatatatatatatatatatatatatata 250
||||||||||||||||||||||||||||||||||
Sbjct: 165 tatatatatatatatatatatatatatatatata 198
Score = 66.5 bits (34), Expect = 2e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 217 tatatatatatatatatatatatatatatatata 250
||||||||||||||||||||||||||||||||||
Sbjct: 167 tatatatatatatatatatatatatatatatata 200
Score = 64.5 bits (33), Expect = 6e-15
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 218 atatatatatatatatatatatatatatatata 250
|||||||||||||||||||||||||||||||||
Sbjct: 154 atatatatatatatatatatatatatatatata 186
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 11
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
