BAC Information

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BAC

Clone NameMSMg01-456E03
Chromosome15 (Build37)
Map Location 7,424,735 - 7,425,069
singlet/doubletsinglet
Overlap genenone
Upstream geneC9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr, Lifr, Egflam
Downstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456E03.T7 (MSMg01no456_e03.b1)MSMg01-456E03.TJ (MSMg01no456_e03.g1)
ACCAG542603AG542604
length777754
length of high quality
(start - end)
336 (71 - 406)---
definitionCHROMAT_FILE: MSMg01no456_e03.b1 PHD_FILE: MSMg01no456_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:01 2005CHROMAT_FILE: MSMg01no456_e03.g1 PHD_FILE: MSMg01no456_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTATTTCCACTCCAGTGTAGGTAGTATAGTGTGAACATGTAAC
ATACATTAGTGGACATTGGCGAGACACTTAGAAATATATAACACACATAA
AGTAGAGCAAAGGAGTCCTTCTTTTGGTGAAATTAACAGTATTTCTGGTC
ATCAATGATCATCTTTAGCAGTAGCTAGGAATCTGCAGAGTATATCTGCC
CATCATGAAAGTGACATAGGCATTTGAAGGATCCAGGAAGATGCCACCTT
TAGAAGGTGCTACAGGTCTGAAAATGCCTTATGGCCTATAACCCAGCCTT
GCTGAAGGATGTGGGACTGCTTCTATTGTTGGAATATCTCGTGCATATGA
TTCCATGTAAGTCTTTCCCGCAATATACTGATAGATTACTTTTAGTGATC
AGGTGTAGACGCTCTGAGATTACTTGCATTGCTTTGATTATCAAATCATT
GGTAGTTTCTCTTAGTTTAATTACTTATTTTTTCACATCTCTCTCTTGTT
CTATTTTTCCTTCCTTTTGTTCCCTTTCCCTATCTGCTTATATCCCTCAC
TTATGCCTATTTCTACTTATTTCCCCCCCCTTTTTTTTTTTACCTTTGAG
ATTCCTCCCTTTTTTTACCCTTTTTTTTTTCCTTTTTTTTTCTCTTGCTC
CCTTTCTCTCTCCGATTAACATTTACTCCATATCTTTAATTTCTGTTACC
CCTCCCTCTTTCTTTATTCTCTCCCCT
AATGGGGGGGGGGGGTGCTGGTGGGGGNNNGTTCTGATTTTCGTNTTCGC
GCAAAAAAGCGTAATACCTGGGGGGGGGGCCGGGGGTTTCCCCCCCAAAA
AAGGGGGGGGGACGCAAAAAAATTTTTTTCCCCCCCAAAAAGGCGTTCCC
TTTCTGTTTTCCCCCTTCAAAAAAAAAAAAAAATTCGGGCGGGGTTTCTC
CTCCTCCCCCTTTTCCCACCATTTTCTTATAGGGGGTTTTTTTCCCGCGC
TACTTGCGCCTCCATGGTCCCCTTCCCGACATGCCTTTTCTTACCCATGA
CGTTTCAGACTTCGCCCACCATCCCCCCTTCTCTTCTCGTCGTCTCTTTT
TCCTTCTCCCCCCCACGGGTCTCCCCTTCAACACCCTCTTATCCCCAACC
CCCTTTTCTTTCCTCTTTTCTCTCCTTCTCTCCCTTCTCCAACCCAACTT
TTTTTTTTTTCCCCGACCCACAACATTAACTTTTTCCCCCTTCTTCTTTT
CTCCCCTCTCTCATTTCCACCTAATATCCCCCACTATTCTTCCCCCCACC
CCTTTCATCAATCCACCCCTCCCTCATCACTCCTCAAACCTCCTCTTTTC
ATAATCTCCAACTCACTTTCTTTATCCCCCACCTTTCCCTCTACTCCTCT
CGTTTTTCCTTTCTCTCTATCATCTCACTCCTTCTCATACTATTCCATAC
CAACCCTCCCTTTCACCCCTCTTCTCCCACTTCCCTATTCCTTCTTTCTC
ATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_e03.b1 MSMg01no456_e03.b1 CHROMAT_FILE:
MSMg01no456_e03.b1 PHD_FILE: MSMg01no456_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:01 2005
         (336 letters)



>mm_chr15_7424535_7425269
          Length = 735

 Score =  619 bits (320), Expect = 0.0
 Identities = 332/336 (98%), Gaps = 1/336 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtaggtagtatagtgtgaacatgtaacatacattagtggacattggcgagacactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agtgtaggtagtatagtgtgaacatgtaacatacattagtggacattgg-gagacactta 259

                                                                       
Query: 61  gaaatatataacacacataaagtagagcaaaggagtccttcttttggtgaaattaacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaaatatataacacacataaagtagagcaaaggagtccttcttttggtgaaattaacagt 319

                                                                       
Query: 121 atttctggtcatcaatgatcatctttagcagtagctaggaatctgcagagtatatctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atttctggtcatcaatgatcatctttagcagtagctaggaatctgcagagtatatctgcc 379

                                                                       
Query: 181 catcatgaaagtgacataggcatttgaaggatccaggaagatgccacctttagaaggtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catcatgaaagtgacataggcatttgaaggatccaggaagatgccacctttagaaggtgc 439

                                                                       
Query: 241 tacaggtctgaaaatgccttatggcctataacccagccttgctgaaggatgtgggactgc 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacaggcctgaaaatgccttatggcctataacccagccttgctgaaggatgtgggactgc 499

                                               
Query: 301 ttctattgttggaatatctcgtgcatatgattccat 336
           |||||||||||||||||||| |||||||| ||||||
Sbjct: 500 ttctattgttggaatatctcatgcatatggttccat 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 735
Length adjustment: 9
Effective length of query: 327
Effective length of database: 726
Effective search space:   237402
Effective search space used:   237402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)