BAC Information

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BAC

Clone NameMSMg01-456O08
Chromosome15 (Build37)
Map Location 22,812,891 - 22,813,152
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040351, EG545091
Downstream geneCdh18, LOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456O08.T7 (MSMg01no456_o08.b1)MSMg01-456O08.TJ (MSMg01no456_o08.g1)
ACCAG543090AG543091
length737763
length of high quality
(start - end)		269 (47 - 315)239 (85 - 323)
definitionCHROMAT_FILE: MSMg01no456_o08.b1 PHD_FILE: MSMg01no456_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:52 2005CHROMAT_FILE: MSMg01no456_o08.g1 PHD_FILE: MSMg01no456_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATACAAAAGAGGATCC
GCGGAATTCATTGTTCCTAAATCACAAAACTACTAATTTTTTCTATTTAT
GTAAAAATATTATGCATCATCTTGTAAAGATATCCCATTGTGTTCTGTAT
AAAATTATCAATATTGACAAGGGACTTCATCTTACAAACATTATAAAAGA
AAACATATTTCTTTCTTACCATCGTTGAAAACAAGATTAATAAATTTCTT
ATTATCTTAAGCAAAAATTGTGAACTTTTTAGTAAAAGGGAAAGATTTCC
CAAATAGAACTGACTATTATATAAAAAATTGATGTACTAATCTGGGACAA
GTAGTGACATTTACAGCAGGTCAACTCTGTCATTCACACATTTTGTTTCT
TTTATTTGTACAAAAGGAAGCATGTTATTCAAATTTAATGTTTTATCATA
GTGGACAGAATATGTAGATTGTAGTATCAATTACTCACAACACCTTTGGC
ACTACTTTCAACTAAAAGTGGCATCTATGTGATTAAATATTTACCATCAA
GAATATTTTCTGTGAAGTGAAGATGGCTTTTAGTTCAGTAATTATTTTCC
AGGCCTAATGATCCTTGACAGAAGTTTCACTGGCTTTGGAATATAACTTG
GATATATTTTAACCTAATCCAAGAATTGAATCTTTTTTTAACACATTGAT
ACCACCATCCTCCCTATTTTTTTGCAACCTTTTCCAN

CTCTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGAGGTACCACCAT
TCTTATCCTAAAGTTGTATTACAAAGCAACAGAAATACAAACTGTGTGAT
ATTGGTATAGATGCAGACAGATAGATCAATGGAATTGAATCTAACACCCA
GAAACAAACCTATACACCCATAGACACTTGATTTTTGACAAAGAAGCCAA
CACCATACTGTGCAAAGAAGAACGCATTTTCAACATTTGTTGCTAGTCTA
GCTGGATGTCTGCATGTAGATGATTTGTTTTAGATTCATAATTATCACCC
TTCATAAAACTCTAGTTAAAGTGGAACAAATCCCTCACCGCAAAATCAGA
CAAACTGAATCTGATAGAAGAGAAAGTGGGAAACAGCCTTGAATGCATTT
CTTTTCTTTTTTTTTTTTCCTATAGCAATTCTTTTTTTTTAATTAGGTAT
TTTCCTCTATTACATTTCCAATGTTATCCCATCAGCTCCCCTTTTTCTCC
CCCCCCTCCCTCACATCTATTGAATAAAATTTTTATTACCGTCACTTCTA
TTGTCTTCGTGCCCTATATGTTCAATCACTTTATCTCGACCCTTCTGAAT
TTTTATCACTCTCTTTTTTACTGCCTCTTGTTTCCCTTTTTTGCCCTTTC
TTATCATTCTCTTTTCCACCTCCTATTGTTCCATTTTGTACCTTCCTTTT
TTTCCCTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_o08.b1 MSMg01no456_o08.b1 CHROMAT_FILE:
MSMg01no456_o08.b1 PHD_FILE: MSMg01no456_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:52 2005
         (269 letters)



>mm_chr15_22812684_22813352
          Length = 669

 Score =  484 bits (250), Expect = e-141
 Identities = 259/262 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcattgttcctaaatcacaaaactactaattttttctatttatgtaaaaatattat 67
           ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 469 gaattcattgagcctaaatcacaaaactactatttttttctatttatgtaaaaatattat 410

                                                                       
Query: 68  gcatcatcttgtaaagatatcccattgtgttctgtataaaattatcaatattgacaaggg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gcatcatcttgtaaagatatcccattgtgttctgtataaaattatcaatattgacaaggg 350

                                                                       
Query: 128 acttcatcttacaaacattataaaagaaaacatatttctttcttaccatcgttgaaaaca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 acttcatcttacaaacattataaaagaaaacatatttctttcttaccatcgttgaaaaca 290

                                                                       
Query: 188 agattaataaatttcttattatcttaagcaaaaattgtgaactttttagtaaaagggaaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agattaataaatttcttattatcttaagcaaaaattgtgaactttttagtaaaagggaaa 230

                                 
Query: 248 gatttcccaaatagaactgact 269
           ||||||||||||||||||||||
Sbjct: 229 gatttcccaaatagaactgact 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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