BAC Information

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BAC

Clone NameMSMg01-457E13
Chromosome15 (Build37)
Map Location 42,939,078 - 43,106,656
singlet/doubletdoublet
Overlap geneRspo2, LOC675960, Eif3s6
Upstream geneLOC100039268, LOC100039197, Angpt1
Downstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457E13.T7 (MSMg01no457_e13.b1)MSMg01-457E13.TJ (MSMg01no457_e13.g1)
ACCAG543387AG543388
length752741
length of high quality
(start - end)		582 (71 - 652)444 (78 - 521)
definitionCHROMAT_FILE: MSMg01no457_e13.b1 PHD_FILE: MSMg01no457_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:26 2005CHROMAT_FILE: MSMg01no457_e13.g1 PHD_FILE: MSMg01no457_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,939,078 - 42,939,659)(43,106,213 - 43,106,656)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATGCGCG
GAATTCAGCATAGTTGCTACAAAGCTCACTGATAAAGTCAAACATTTAAA
TAAACAATGTAAAAAGATATACTCGGAAGAAAAAAATAGTAGAATAATCC
TAAAATAAATGCAGGTCAAAGGGCAAGTTTCCTGAGGCATTAAACCTACC
TAGTAGCATGTAAAGTGCTACTTGGAAAGAAGACAAAAATATTGCAGTTT
ATTAATTTTCTCAAAGTAAATAGCTTCAAAGTGCAATGGAAATGAAACAT
CAGAGAGCTTCCCAGAGGAAGGTTATAGTCTTCTATAGCCACAATGTTAT
TGTTAGACCTCAGATATGTAACAAGGATGAAATGCTAAACCTCTTGTCTG
CTTCCACATATGCTCAGTTATCTCTGAAATGCTATGTTCCACCTATCCAC
AAACTAATTAGGGAGTATGTGTTGCCACGAGCTGTTTATTTTTATTTAAT
TCAAAACAAATCATTCACTATTCGTTGTCTTGTTGTTGGCATTTTTATAG
CCTAAGCCAGTTGTATTACAGAATTTTATTATAGAATGGTATTATAGAAT
GCCTTANAATCTGATAGTGATACAGCAATTACTAGTTTGTGATCATTAAC
CAAAATATATCTTACTAACGTAATACCATGGATGGAAGTGTGTGTGTTTG
TGCGTGCTTTTCTCTTTTATCCTCCTCTTTTTCTTCCTATCCTATTCTTC
TA

NNNCCGATGATGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAACAATGAATGTTAAGACTT
ACTTTTGTATGTGAGTGTTTTTGTTTATGTGCACGTATACAAGTCTATTG
TACTTGAAGCTCAGAAGACGGGGTCAGATCCCTTGGTACTGGAGTTAGAA
GTAGTTGTGAACCACCAAATAGGTGCTCTTAGCATCTAAGCCGCCTCTCT
AGTCCGAGTACTAATTCTTGAAAAGAAGCTTTCAAACCAATTATTCATAC
CTGCCATGGCAGCACCATATTCTCTGCCCCTTCTAATGAGACATTTGGCA
GTATCTGGAGATTTTGAATGGTGAAATTTGAGAGGGAAGTATAGAGTCGG
TGTAGAAGAACTAAACATCCTGTGCACAGGGCGCCTTTCCCTGTTTCCAG
TGGATGCCTAGGATGCTTGGGGTGCTTTCTGAAGGAGAAACTTCCCATGC
CACATTCTCTTGTATCCTCTCAATGTCTGTAGCATCCCAGCTAAGATTAT
TTTATTTCTAAATTCTTTTCGCTAGAAACAGACTTTCTTGTTTGGTTTCA
AAATAAGATATGTTGCCTTTACCTTATTTAATGCGCATGAGCTTTTTGAA
GTACTAAAATTTTTTTTAGTTTAGGGCACTTAAGAAAAGGCTGCTGTTGG
TATATACTTTATTACCCTCTTGTGCTTTCCCTTTCCAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_e13.b1 MSMg01no457_e13.b1 CHROMAT_FILE:
MSMg01no457_e13.b1 PHD_FILE: MSMg01no457_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:26 2005
         (582 letters)



>mm_chr15_42938878_42939859
          Length = 982

 Score = 1096 bits (567), Expect = 0.0
 Identities = 578/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagctcactgataaagtcaaacatttaaataaacaatgtaaaaagatatactcggaaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aaagctcactgataaagtcaaacatttaaataaacaatgtaaaaagatatactcgggaga 260

                                                                       
Query: 61  aaaaaatagtagaataatcctaaaataaatgcaggtcaaagggcaagtttcctgaggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaatagtagaataatcctaaaataaatgcaggtcaaagggcaagtttcctgaggcat 320

                                                                       
Query: 121 taaacctacctagtagcatgtaaagtgctacttggaaagaagacaaaaatattgcagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacctacctagtagcatgtaaagtgctacttggaaagaagacaaaaatattgcagttt 380

                                                                       
Query: 181 attaattttctcaaagtaaatagcttcaaagtgcaatggaaatgaaacatcagagagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaattttctcaaagtaaatagcttcaaagtgcaatggaaatgaaacatcagagagctt 440

                                                                       
Query: 241 cccagaggaaggttatagtcttctatagccacaatgttattgttagacctcagatatgta 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagaggaaggatatagtcttctatagccacaatgttattgttagacctcagatatgta 500

                                                                       
Query: 301 acaaggatgaaatgctaaacctcttgtctgcttccacatatgctcagttatctctgaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaggatgaaatgctaaacctcttgtctgcttccacatatgctcagttatctctgaaat 560

                                                                       
Query: 361 gctatgttccacctatccacaaactaattagggagtatgtgttgccacgagctgtttatt 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccatgttccacctatccacaaactaattagggagtatgtgttgccacgagctgtttatt 620

                                                                       
Query: 421 tttatttaattcaaaacaaatcattcactattcgttgtcttgttgttggcatttttatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttatttaattcaaaacaaatcattcactattcgttgtcttgttgttggcatttttatag 680

                                                                       
Query: 481 cctaagccagttgtattacagaattttattatagaatggtattatagaatgccttanaat 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 cctaagccagttgtattacagaattttattatagaatggtattatagaatgccttaaaat 740

                                                     
Query: 541 ctgatagtgatacagcaattactagtttgtgatcattaacca 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgatagtgatacagcaattactagtttgtgatcattaacca 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no457_e13.g1 MSMg01no457_e13.g1 CHROMAT_FILE:
MSMg01no457_e13.g1 PHD_FILE: MSMg01no457_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:26 2005
         (444 letters)



>mm_chr15_43105863_43106706
          Length = 844

 Score =  843 bits (436), Expect = 0.0
 Identities = 442/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaacaatgaatgttaagacttacttttgtatgtgagtgtttttgtttatgtgcacgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 cctaacaatgaatgttaagacttacttttgtatgtgagtgtttttgtttatgtgcacgta 735

                                                                       
Query: 61  tacaagtctattgtacttgaagctcagaagacggggtcagatcccttggtactggagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tacaagtctattgtacttgaagctcagaagacggggtcagatcccttggtactggagtta 675

                                                                       
Query: 121 gaagtagttgtgaaccaccaaataggtgctcttagcatctaagccgcctctctagtccga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaagtagttgtgaaccaccaaataggtgctcttagcatctaagccgcctctctagtccga 615

                                                                       
Query: 181 gtactaattcttgaaaagaagctttcaaaccaattattcatacctgccatggcagcacca 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtattaattcttgaaaagaagctttcaaaccaattattcatacctgccatggcagcacca 555

                                                                       
Query: 241 tattctctgccccttctaatgagacatttggcagtatctggagattttgaatggtgaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tattctctgccccttctaatgagacatttggcagtatctggagattttgaatggtgaaat 495

                                                                       
Query: 301 ttgagagggaagtatagagtcggtgtagaagaactaaacatcctgtgcacagggcgcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttgagagggaagtatagagtcggtgtagaagaactaaacatcctgtgcacagggcgcctt 435

                                                                       
Query: 361 tccctgtttccagtggatgcctaggatgcttggggtgctttctgaaggagaaacttccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tccctgtttccagtggatgcctaggatgcttggggtgctttctgaaggagaaacttccca 375

                                   
Query: 421 tgccacattctcttgtatcctctc 444
           | ||||||||||||||||||||||
Sbjct: 374 taccacattctcttgtatcctctc 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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