BAC Information

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BAC

Clone NameMSMg01-457J09
Chromosome15 (Build37)
Map Location 23,388,615 - 23,388,998
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457J09.T7 (MSMg01no457_j09.b1)MSMg01-457J09.TJ (MSMg01no457_j09.g1)
ACCAG543617AG543618
length787768
length of high quality
(start - end)		406 (49 - 454)444 (82 - 525)
definitionCHROMAT_FILE: MSMg01no457_j09.b1 PHD_FILE: MSMg01no457_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:51 2005CHROMAT_FILE: MSMg01no457_j09.g1 PHD_FILE: MSMg01no457_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTAAAGTATCAAACAGGTTTGTTGGTATTTCTTCAAGGAA
TGGTAGTGTATCTGCTGCAAACGCAATTACCTTAATATATTCTGGAAGAA
ATCTAGCAGTATCTGGATTTAGTTAAAGACTTTTTACTCATCTAAATCTA
TACTGGACATGTACTCTCTTTGTTATTTTAAAATTCTTTGTCATTTTTAA
AAATTTTATCATCATTATTATGTGAGTTACTCAACACTCACACTATTGAA
TTAAAATGTCACTTTCAATACAGTATATCTAATGTGTGCAACATATATAT
TACATATAATATATTATATATATTATGCGTAATATATATTATATATATTA
TATAATCATTTATATATATAATCATTTTAGCATACTTGGTAACTCTATAT
TGTCTACATCAGTATTTCTCTATTCATATATCTATCCATTTATCATCTAT
TGCCCAAATATATATAAATCATTTTAAAACCTGGCTTATATTTTGGGAGT
TTAAATTTTTCCCACTTGGATGGTCCTTTCTTAAAGTTCAGTAATTTTGG
GCACAATTTCTTGGGGGGTGTCCACAAAAGGAAATTTTTTTGTGGTGATC
CCCGGGAAAAATAAAAATTTTCTTTGGTTTGGGTCTCATATACTCAATTG
GCCTATATATTTCTTTTTCCGGTGGATATCCTCTTTTTTTTCCTCTCCAA
TTTTCCTCTCTTTCTTTTATGTTACACCTCCATTTTT

NNTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGCTAGCCTCCAAAA
CTATCAAACAACATAATCAAAAATGGGGTATAGAACTAAACAGAGAATTT
ACAACAGAGGAATCTCCAGTTGCTGAGAAGCACTTAAAGAAATGTTCAAA
GTCCTTAGTCATCAGGGAAATGCAAATCAAAATAAAAAGGACCTTGAGAT
TCTACTTCACACTAATAATAATGGCTAAGATAAAAAACACAGGTGACAGC
TCATGTTGGTGAGGATGTGGAGAAAGAGGAACTCTCCTCCATTGCTGGTG
GTATTGCAAAGTGGTACAACCACTCTGGAAATAAATCTGGAGGTTTCTCA
GAAAATTGGAAATAGATTTACCTGAAGATCCAGCAATGCCTCTCTTGGGA
ATATACCCAAAAGATGCCCCACCATGCCACAGGGGCATGTGTTCCACTAT
GTTCTTAGCAGCCTTATTTGTGATAGCCCAAAGCTGAAAACCATTCAGAT
GTCCCACAATGGGAAGAATGGATACAGAAAATGTGATTTTGTTAACCAAT
TGGAAAATTTTTTTGCGTATTACAAAACAGAACACCCTGGGTTTTGTCAA
TGGGAACTAAAAAAAAATACTATTTTCTTGTGTGTGTGTAATCCGTAACC
CCCTTGGGTTAAGTCTGGGTCGTTCTGCCCTTTATAATTGGTTTTGGTGT
TTTATTTATTTTTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_j09.b1 MSMg01no457_j09.b1 CHROMAT_FILE:
MSMg01no457_j09.b1 PHD_FILE: MSMg01no457_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:51 2005
         (406 letters)



>mm_chr15_23388408_23389213
          Length = 806

 Score =  609 bits (315), Expect = e-179
 Identities = 373/405 (92%), Gaps = 27/405 (6%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcttttaaag---tatcaaacaggtttgttggtatttcttcaaggaatggtagtgtatc 64
           |||||||||||   ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcttttaaagaagta--aaacaggtttgttggtatttcttcaaggaatggtagtgtatc 265

                                                                       
Query: 65  tgctgcaaacgcaattaccttaatatattctggaagaaatctagcagtatctggatttag 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgctgcaaacacaattaccttaatatattctggaagaaatctagcagtatctggatttag 325

                                                                       
Query: 125 ttaaagactttttactcatctaaatctatactggacatgtactctctttgttattttaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttaaagactttttactcatctaaatctatactggacatgtactctctttgttattttaaa 385

                                                                       
Query: 185 attctttgtcatttttaaaaattttatcatcattattatgtgagttactcaacactcaca 244
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 386 attatttgtcatttttaaaaattttatcatcat-attatgtgagttactcaacactcaca 444

                                                                       
Query: 245 ctattgaattaaaatgtcactttcaatacagtatatctaatgtgtgcaacatatatatta 304
           ||||||||||||||||||||||||||||||||| |||||||||||||    |||||||  
Sbjct: 445 ctattgaattaaaatgtcactttcaatacagtagatctaatgtgtgc----tatatat-- 498

                                                                       
Query: 305 catata-atatattatatatattatgcgtaatatatattatatatattatataatcattt 363
            ||||| ||||||| ||||           ||||||||||||||||||||||||||||||
Sbjct: 499 -atatatatatattgtata-----------atatatattatatatattatataatcattt 546

                                                        
Query: 364 atatatata--atcattttagcatacttggtaactctatattgtc 406
           |||||||||  ||||||||||||||||||||| ||||||||||||
Sbjct: 547 atatatatataatcattttagcatacttggtagctctatattgtc 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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