BAC Information

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BAC

Clone NameMSMg01-458E08
Chromosome15 (Build37)
Map Location 89,470,949 - 89,471,352
singlet/doubletsinglet
Overlap genenone
Upstream geneBrd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a
Downstream geneLOC676575, Syt10, Alg10b, Cpne8, EG627342
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458E08.T7 (MSMg01no458_e08.b1)MSMg01-458E08.TJ (MSMg01no458_e08.g1)
ACCAG544140AG544141
length760784
length of high quality
(start - end)		500 (51 - 550)404 (77 - 480)
definitionCHROMAT_FILE: MSMg01no458_e08.b1 PHD_FILE: MSMg01no458_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:49 2005CHROMAT_FILE: MSMg01no458_e08.g1 PHD_FILE: MSMg01no458_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGAATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAATTTTTCCCCTGTGTTCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTT
TGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATT
CGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCA
AGTGACCGTAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGNCTACTTGTCTGGCTCTATACAGTAACTGGTAGTTTTTTCCCATTTG
CTCTGAATAAAGGTTTATTTCTAGTTTGGGGATTTCGCCAGAAGTTCTTT
TACCCTTGAAAAAATTTATCTTTTTCTCTGTTTTTTTTTTCCTCTTTGTA
CTATTCTGTT

NTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTCTACCTGCATCATGCTTG
CTTAGATGCTGCCCTGCTCCCACCTTGATGATGACAGACTGAACCTCTGA
ACCTGTAAGCCAGCCCTAATTAAATGTAGTCTTTTATAAGACTTGTCTTA
GTCATGGTGTCTGTTCATAGCAGTAAAACCCTAACTAAGACAAGGTCCAT
ATCCTCCCTGTTAACCTTTCCTTTCCACTGCCTGTGGGTGAGTGGTGGGC
TAGAAGGGAGGTTAGAGAATTTTTTTACCCTTAAAGTAGGTTTTAAAACA
TATAATCCTACACTTTTATCTTATCCTCAGAGGTTGAAGCCTTTCTTTGT
TCCTGTTGCCCCTCTGGGCTTTCCCATGCACTTACTCTGAGGCACGTGTG
CTGTCCAGGGATGTGGGGTGGAGGAAAAGGAGAAAGTATTTGATTAGTAT
CTGTCCTTCTATTTTCCTTTCCCAACTTTCTTTTTCCCCCTTGCCTTTTC
TTTCTTTTCCCCCTTCTTTCTCCTTCTTCGCCGTCCCTTTTTTATTTCTT
TCATTATATATTTCCTCCTCCCCATGCTATTAATTTCTTTTTTTTTTTTT
CCCTCCATTCTTTTTTTTTTTTTTTTTTTTTCCTCTTTCCTTCGTTCTTT
CCTCCTTCATTTCCTTCTATTTGTTTTTTCTCTTTCTTTCTATATTTCTA
CTATTTTTCTTTTCCCTCCCTCTTTTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_e08.g1 MSMg01no458_e08.g1 CHROMAT_FILE:
MSMg01no458_e08.g1 PHD_FILE: MSMg01no458_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:49 2005
         (404 letters)



>mm_chr15_89470749_89471552
          Length = 804

 Score =  727 bits (376), Expect = 0.0
 Identities = 397/404 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctctacctgcatcatgcttgcttagatgctgccctgctcccaccttgatgatgaca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctctacctgcatcatgcttgcctagatgctgccctgctcccaccttgatgatgaca 260

                                                                       
Query: 61  gactgaacctctgaacctgtaagccagccctaattaaatgtagtcttttataagacttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgaacctctgaacctgtaagccagccctaattaaatgtagtcttttataagacttgt 320

                                                                       
Query: 121 cttagtcatggtgtctgttcatagcagtaaaaccctaactaagacaaggtccatatcctc 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttagtcatggtgtctgttcatggcagtaaaaccctaactaagacaaggtccatatcctc 380

                                                                       
Query: 181 cctgttaacctttcctttccactgcctgtgggtgagtggtgggctagaagggaggttaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgttaacctttcctttccactgcctgtgggtgagtggtgggctagaagggaggttaga 440

                                                                       
Query: 241 gaatttttttacccttaaagtaggttttaaaacatataatcctacacttttatcttatcc 300
           | ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatttaactacccttaaagtaggttttaaaacatataatcctacacttttatcttatcc 500

                                                                       
Query: 301 tcagaggttgaagcctttctttgttcctgttgcccctctgggctttcccatgcacttact 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagaggttgaagcctttctttgtccctgttgcccctctgggctttcccatgcacttact 560

                                                       
Query: 361 ctgaggcacgtgtgctgtccagggatgtggggtggaggaaaagg 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaggcacgtgtgctgtccagggatgtggggtggaggaaaagg 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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