NNNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGATGACAATCGAATGGCAGAGAAGCACCTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACTGGTAATAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTA
CACAATGGAGTACTACTCGGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT
TCACAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCC
CAAACCTAGGATACCCAAGATATAAGATACCATTTGCTAAACACTTGAAA
CTTCAGAAGAATGAAGACTGAAGTGGGGACACTATGCCCCCTCCTTAAAA
TGGGAAACAAC

NCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTCTCATTGAAAAGTAGATT
CCTTTCCCCTTTCATGACTCTGTGCAGTCTGTGGCTGAAAACAATGTACT
AGGAGAGACCATGTGGGTGCATTCCTCTGTCAGGAACAAGTCACGTGCTT
TTGTTCACCACAGCAACTCTGAGCCATGAGAAGATATGCAGCCAGGCACA
TCATATCCTCACAGGCCAAAAATGGGGGTCTGTCAACTTATCATTAGGTC
TTATAACCAGAAACGAGGAAGCTAAAAATAAACATTGGACCAATTCTGTA
TTTTCTCTTTCTTAAAAATTGATATCTAGAAGAGAAAATGAAGTCAAACA
TAGCAAAAATATAAGCCAGAAAGTCCATGCACTTATAATGCTCATGAACT
ATACAGAGGGCTTTCATCAGGGAGAATAAATTGGTCTTGGTTGTGGCAAA
CTTGAGTCGTTTGTTTGTTTGTTTGTTTGTTTGTTTGNTTGTTTTTTGNN
TTTTTTCNNTNNNTTTTTTNTTTTTTTTNTTTTTTTCTTCTTTTTTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTTCTCCTTTTTTTCCTCCCCTCTCTCC
CTTTTCCCCTTCCTTTCCTCCTTCTTTTCCCCCTTCTTTTCCTTTTTCTC
CTTCTTTTTTTTTNCTCTCCTCCCTTTTTTCCTTTTTTTCCTTTTTTTCC
TCTCTTTTTTTTTTTN

Query= MSMg01no458_j04.g1 MSMg01no458_j04.g1 CHROMAT_FILE:
MSMg01no458_j04.g1 PHD_FILE: MSMg01no458_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:13 2005
         (460 letters)



>mm_chr15_40563050_40563909
          Length = 860

 Score =  737 bits (381), Expect = 0.0
 Identities = 438/457 (95%), Gaps = 3/457 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttctcattgaaaagtagattcctttcccctttcatgactctgtgcagtctgtggct 60
           |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 201 tcttttctcattgaaaaggagattcctttcccctttcatggctctgtacagtctgtggct 260

                                                                       
Query: 61  gaaaacaatgtactaggagagaccatgtgggtgcattcctctgtcaggaacaagtcacgt 120
           ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 261 gaaaacaatgtaccaggagagaccatgttggtgcattcctctttcaggaacaagtcacgt 320

                                                                       
Query: 121 gcttttgttcaccacagcaactctgagccatgagaagatatgcagccaggcacatcatat 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttttgttcaccacagcaactctgagccatgagaagatatgcagccaggcacatcatat 380

                                                                       
Query: 181 cctcacaggccaaaaatggggg-tctgtcaacttatcattaggtcttataaccagaaacg 239
           |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct: 381 cctcacaggccaaaaatggggggtctgtcaacttatcattaggtctgataaccagaaatg 440

                                                                       
Query: 240 aggaagctaaaaataaacattggaccaattctgtattttctctttcttaaaaattgatat 299
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 aggaagctaagaataaacatttgaccaattctgtattttctctttcttaaaaattgaaat 500

                                                                       
Query: 300 ctagaagagaaaatgaagtcaaacatagcaaaaatataagccagaaagtccatgcactta 359
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagaagagaaaatgaagtcaaacacagcaaaaatataagccagaaagtccatgcactta 560

                                                                       
Query: 360 taatgctcatgaactatacagagggctttcatcagggagaataaattggtcttggttgtg 419
           |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 561 taatgctcgtgaactatacagagggctttcatcaggg-gaataaattggtcttgcttgtg 619

                                                
Query: 420 gcaaacttgagtcgtttgtttgtttgtttgtttgttt 456
           ||||||||||||| ||||||||||||||| |||||||
Sbjct: 620 gcaaacttgagtcatttgtttgtttgttt-tttgttt 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)