Query= MSMg01no458_k15.b1 MSMg01no458_k15.b1 CHROMAT_FILE:
MSMg01no458_k15.b1 PHD_FILE: MSMg01no458_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:19 2005
(323 letters)
>mm_chr15_53717743_53718465
Length = 723
Score = 530 bits (274), Expect = e-155
Identities = 274/274 (100%)
Strand = Plus / Plus
Query: 1 atatgtgtttaggtcattgacgtttatggaaataacaggagaaaacacattttgatttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgtgtttaggtcattgacgtttatggaaataacaggagaaaacacattttgatttaa 260
Query: 61 aaatacctgaaagcaggtaaaatggatggactaagacatggattctggacccaggagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatacctgaaagcaggtaaaatggatggactaagacatggattctggacccaggagtta 320
Query: 121 gaatttaaatgctggactttctccaggtaatcagcttaagaaaaaaatgacccttgtggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatttaaatgctggactttctccaggtaatcagcttaagaaaaaaatgacccttgtggt 380
Query: 181 atcctgtaaaacaaccttctcccttccccttaactggtcagttcatgagaatcaataaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctgtaaaacaaccttctcccttccccttaactggtcagttcatgagaatcaataaac 440
Query: 241 atcactaccacctgaagagaggttccattctttc 274
||||||||||||||||||||||||||||||||||
Sbjct: 441 atcactaccacctgaagagaggttccattctttc 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_k15.g1 MSMg01no458_k15.g1 CHROMAT_FILE:
MSMg01no458_k15.g1 PHD_FILE: MSMg01no458_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:19 2005
(532 letters)
>mm_chr15_53856304_53857235
Length = 932
Score = 886 bits (458), Expect = 0.0
Identities = 510/532 (95%), Gaps = 10/532 (1%)
Strand = Plus / Minus
Query: 2 agagcactctctgcaggcaagctctcctcttgcagggcaggtgtctagcagtctggcgct 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 732 agagcactctctgcaggcaagctctcctcttgcagggcaggtgtctagcagtctggagct 673
Query: 62 ctgatccatctcctgagttctcgggtcagaaccctccctttcggcagactctcctctggc 121
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 672 ctgatccatctcctgagttctcgggtcagaaccctccctgtaggcagactctcctctggc 613
Query: 122 aaggaatgtgcccaggggtctgggtctcagctctgcctcctggctgaggatgaaggccgg 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 612 aaggaatgtgcccaggggtctgggtctcagctctgcctcctggctgaggatgaaggcccg 553
Query: 182 atgggaccctgaccaagaagctctgttgcttctattgcccaggtgctctcaggtgatttt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 atgggaccctgaccaagaagctctgttgcttctattgcccaggtgctctcaggtga---- 497
Query: 242 t----atgtcctgggtgtgctaggggttctctagtcccatagatgccctcagctgggttc 297
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcaggaggtcctgggtgtgctaggggttctctagtcccatagatgccctcagctgggttc 437
Query: 298 atgcagaagatgatggagctggccccgatctgaatggatcccagcctctggtcaggtggg 357
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 436 atgcagaaaatgatggagctggccccgatctgaatggatcccagcctctggtcaggcggg 377
Query: 358 gttcctttgtccctgttcctgctggcacaagaccctctgagattctctttttttttttct 417
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct: 376 gttcctttgtccctgttcctgctggcacaagaccctctgtgat--tctttttttttctct 319
Query: 418 ctcgagacagggtttccctgtatagccctggctgtcctggaactcactttgtagaccagg 477
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 318 ctcgagacagggtttctctgtatagccctggctgtcctggaattcactttgtagaccagg 259
Query: 478 ctggcctcgaactcagaaatctgcctgcctctgcttcccaagtgctggatta 529
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 258 ctggcctcgaactcagaaatctgcctgcctctgcctcccaagtgctggatta 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
