BAC Information

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BAC

Clone NameMSMg01-459K07
Chromosome15 (Build37)
Map Location 54,141,864 - 54,142,102
singlet/doubletsinglet
Overlap genenone
Upstream geneExt1, Samd12, EG665097, EG621631, Tnfrsf11b, LOC665280
Downstream geneEG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459K07.T7 (MSMg01no459_k07.b1)MSMg01-459K07.TJ (MSMg01no459_k07.g1)
ACCAG545187AG545188
length1,200765
length of high quality
(start - end)
---227 (80 - 306)
definitionCHROMAT_FILE: MSMg01no459_k07.b1 PHD_FILE: MSMg01no459_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:38 2005CHROMAT_FILE: MSMg01no459_k07.g1 PHD_FILE: MSMg01no459_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATACCAAGCACCATAACTCCAAATATATACATCAAATTCTCGAAGAAAA
ATTGGTTTAACATATTTCCCCTCTGCCCTATAAGGCGTGGTTCGCCCCCC
TATGCCGCATCCACTTACCACAGTACACTTGCTTACTCATGCTGTACAAA
AGAGCGTTGGAAAGATGAGGCGCGGTACCGGAGGTAGTAAATGACCTAAA
TTATATCGACATCCCCACGATATCGCACCCCCGTATGAACGATGCGCTTA
CCCCGCCTTTGTCAATTCCTAAGCCACACGCAATATATAATTTAAATATA
AAATGAGTTAGGCCGATAGATACCGGGTGTGAGGGCGCAGGCATCACACG
ACAAAATATATCTTAACATTGAAAAAGGGACCACCGCATAGACAGGGACA
CAAGACAACACAGCATAACAAAACGAATTATTATCATGCTTCGTTAAGCG
CGCGGCAAGATACCCAGAATAAACATCCGGGGATAAATAGTGACTTACAT
AATATTTAAATAGAGAATACCAGGAGCGATGGTTGTGGGACGCCTTAATA
TTGGCCGCACGGAGGAGTAGAGGACGACAAATACCAAATTCCCGCCATCC
TCTGTATCCCCGCTAATATAACACGATCTTTGCACGCCCGCCCGGCCGTT
AGTATATATATCCACGGTGATGCACACACCAGCCGCGCGGCCATTATAAA
AAATAAGGTATAAGGCGCGGATAATCACACACCCCGCGGCATTAACGAAT
AACCAATAACGCTGTCGCCACCAATTNACACCGCTACAATGACAACGCAC
ATGTAAATCAACCGTATTACGCGGAAACCACGCGCAACTATTAATATACA
TAAAAATACGAATCGCTCGCACGCCCGATTTCTTCCGACCCCCCTGTCTA
TGCGTGATCGGTAGCCGCGGTGGATGTTATAACACGCACCTATTAAACAC
GTTACGAGTGAGTGGATCGAATTAACGGCTTGTTAATCGAGTTGACCACA
GATGTGTCGTGTCCGGTGCCTATATNTTAATAGTCTCGATCTAATAGCTA
CAACATTATATACGCCGCGTGTCTCCGCATTTACGCCGCCGTCATATATG
TACGGAACTGTCTACGTACATTATATTATATTTTCGGCGCGGCCTTATAT
ATACTCACAGCGCCGACCATTACCAATGCTATATATTATACGACTATNGN

TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAAAAGTCGATGAGGATC
TATCTGGAGTAAACAGGGATCTGAGCAGAGTGAACTGCAAAGAATCCTTG
AAATGGGACAGGTGATGCTGGGTGATTTAGGGAGAGGAAGACAGTCCCAA
CATTTAACTCAGAGTAACTATTGGAAGGAAAGTGTCAAATGAGATGGGAT
GAAAGGAAGCAGAATCTACTATGATTTGAATAGAAAACAGCTGGAGAGTT
TAGAACAGTGGTGTTACAGCACTGTTTCTAGTTTAAAAGGATATCTCCAC
CCACTCCATACAAATGAGCTGAAATACATAGTATACAGTGTCTCAAATGG
TGTGCAGTAATTTCTGCCTCCTGGAATTGCTCTCATTTATCCCCTGAATG
CAAGTATGAGCACACTGTCATCTTGTGTTTTTCGTCCCGAGAATTCCCTG
CATTGTATGCCCTATTACTTCTTCCATCCAACTCTCCCTCCTCCTTTTCT
CCTTCTCTTCCCCTTTTCTTTTTTGTCTTCTCCCTTTTTCGCCCCCCCTT
TTTTCTTTTTTTTTTTCTTTACCCCCCCCGTCCTCCCACTCCCCCCCCAC
TCTTCTACGCCTTCTTCCATTCTTCTCACCTTTTTCTCCTTATTTTCCTT
CACTCCCCTTTCATCTAATTATTTATTTTTTTTTCACATCTCCCTCCCTT
CTTTTTCTTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_k07.g1 MSMg01no459_k07.g1 CHROMAT_FILE:
MSMg01no459_k07.g1 PHD_FILE: MSMg01no459_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:38 2005
         (227 letters)



>mm_chr15_54141718_54142344
          Length = 627

 Score =  389 bits (201), Expect = e-113
 Identities = 224/239 (93%), Gaps = 12/239 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaaaagtcgatgaggatctatctggagtaaacagggatctgagcagagtgaactgca 60
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 385 agtgaaaagtcgatgaggatctatctggagcaaacagggatctgagcagagtgaactgga 326

                                                                       
Query: 61  aagaatccttgaaatgggacaggtgatgctgggtgatttagggagaggaagacagtccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaatccttgaaatgggacaggtgatgctgggtgatttagggagaggaagacagtccca 266

                                                                       
Query: 121 acatttaactcagagtaactattggaaggaaagtgtcaaatgagatgggatgaaa----- 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 265 acatttaactcagagtaactattggaaggaaagtgtcaaatgagatgggatgaaaggaag 206

                                                                      
Query: 176 -------ggaagcagaatctactatgatttgaatagaaaacagctggagagtttagaac 227
                  ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 cagaaagggaagcagaatctactatgatttgaatagaaaacagctggaaagtttagaac 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)