BAC Information

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BAC

Clone NameMSMg01-459M17
Chromosome15 (Build37)
Map Location 48,596,395 - 48,596,781
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3
Downstream geneEG665146, LOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459M17.T7 (MSMg01no459_m17.b1)MSMg01-459M17.TJ (MSMg01no459_m17.g1)
ACCAG545303AG545304
length798793
length of high quality
(start - end)
390 (40 - 429)387 (68 - 454)
definitionCHROMAT_FILE: MSMg01no459_m17.b1 PHD_FILE: MSMg01no459_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:51 2005CHROMAT_FILE: MSMg01no459_m17.g1 PHD_FILE: MSMg01no459_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTGAGAAGCTTACCTATTCAGTAACATTCAAATTCACTTCTAGTAGAGAC
AGTGAAACTAATTAGGCATTACAAAGAGCAGAGCTAGAATAACTCAGGGC
TAGTCTGCAGAGTGATTACTTAGGACAGTAGCCAAGCCAAGTCTTACCCA
AACAAGGGGAATACACAATGACCTAGCAAATAGGTGGGTTAACCATGAAA
GAGTTAGGGAATCCCCCTGGTTCAGGTTTCTTCACTAGGTCCAAAGGAAC
AGTATAATCAGGCATTTACTAAGAACCCCTGGTGGTTGGTTTAACAATAG
ACTAGCTTTATACCCATCCCCATTCTAAGTGGTAATCTGAGGCCTTGCCC
TGCCATCTTTTGATGTATGCATTCCTTTTGTGTTGTGTCACTCTAACTCT
GTGTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATAT
CAGGGTCCTTTCAGCACAATCTTGCTAGTGGATGCAATAATGTCAGCGTT
TGGAGGTTGATCATGGGATGGATCCCTGCATATGGGAATCACTTAAAGGG
CCATCCTTTTTCCCAGTCCCAAAATTTGGTTCTGGACTCCCTCCCCGGGG
GGGTTGTGCCCCTCTCTAAAAAGGGAAAAGTGGCCCCCCTTTGTCTTCCT
CTTCCTTAAATTACGGGCGTTTTATAATGGTCTTTATCTTGTGCGTACCA
ATATTGCGGGAGCATTTCCTTCCCGAGGGTCTTTTGTGGGGTTCTTTG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCATATCTGCCCAATAGATGACTGTAGTGGTT
TGGTACAACAATGGCATCAGTCAGGTATGGAAGGAGGAGGGACTCAGGGG
ACTTAAATGAAATCTTCCAAAAGGATGAACAAGTGAAAGAATGAAGAGTG
CCCTGTGACATCTGCAAATATATCATTGTCTTCTAACTCAAAGAAAAGTT
TCCCTTCTTTATTTGTCACCTTTGGTGATTCATAGCGAGTATTTTTGTTC
AAAATGTAGTACACTCCATTTGTTGAAAAGTAATTATCCCCCTTCTTCCC
ATGTCCTATTGTTAATCTGTACATGCCCAAGGACTAACAAGTCAATAAAA
AGAAGTGTTAAATATTCACTCTCTGTGGCAATGACAACCTGAATATAATT
ATTTAAAGAGAAATAATCCCAGATAGAAAGTCCAGAACCATATAAATTAT
CCCTATGTGAATTTAAATGGGAGACTTCCTAAAAATTGAGTATAAGATTG
TACTATCAGGCCTTGGGGGCTTAGAAAAAAAAAAATTTTTGGAAAATTGC
TTTTTGTTCCCTTGGTTAAAACCAAACGGAGGGCCCGGGTCGGTTTTTTC
TTACTCCCAATTTAAAAAAAGGGCTGCGGGCGCCCCAAAAAAAGAAATGT
GGCTGCAACAATGAGGGTGGCTCTTCCTTTCNATTACTCCCCTTCTTTTA
TTATAAATTTTTTTCTCTCGCTCTCCTCTTTTCTTTTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_m17.g1 MSMg01no459_m17.g1 CHROMAT_FILE:
MSMg01no459_m17.g1 PHD_FILE: MSMg01no459_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:51 2005
         (387 letters)



>mm_chr15_48596195_48596981
          Length = 787

 Score =  733 bits (379), Expect = 0.0
 Identities = 385/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatatctgcccaatagatgactgtagtggtttggtacaacaatggcatcagtcaggta 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tccatgtctgcccaatagatgactgtagtggtttggtacaacaatggcatcagtcaggta 528

                                                                       
Query: 61  tggaaggaggagggactcaggggacttaaatgaaatcttccaaaaggatgaacaagtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tggaaggaggagggactcaggggacttaaatgaaatcttccaaaaggatgaacaagtgaa 468

                                                                       
Query: 121 agaatgaagagtgccctgtgacatctgcaaatatatcattgtcttctaactcaaagaaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 467 agaatgaagagtgccctgtgacatctgcaaatatatcattgtcttctacctcaaagaaaa 408

                                                                       
Query: 181 gtttcccttctttatttgtcacctttggtgattcatagcgagtatttttgttcaaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtttcccttctttatttgtcacctttggtgattcatagcgagtatttttgttcaaaatgt 348

                                                                       
Query: 241 agtacactccatttgttgaaaagtaattatcccccttcttcccatgtcctattgttaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agtacactccatttgttgaaaagtaattatcccccttcttcccatgtcctattgttaatc 288

                                                                       
Query: 301 tgtacatgcccaaggactaacaagtcaataaaaagaagtgttaaatattcactctctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgtacatgcccaaggactaacaagtcaataaaaagaagtgttaaatattcactctctgtg 228

                                      
Query: 361 gcaatgacaacctgaatataattattt 387
           |||||||||||||||||||||||||||
Sbjct: 227 gcaatgacaacctgaatataattattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)