BAC Information

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BAC

Clone NameMSMg01-460C09
Chromosome15 (Build37)
Map Location 70,300,872 - 70,301,211
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051, 1700010C24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460C09.T7 (MSMg01no460_c09.b1)MSMg01-460C09.TJ (MSMg01no460_c09.g1)
ACCAG545574AG545575
length711707
length of high quality
(start - end)
350 (313 - 662)458 (72 - 529)
definitionCHROMAT_FILE: MSMg01no460_c09.b1 PHD_FILE: MSMg01no460_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:18 2005CHROMAT_FILE: MSMg01no460_c09.g1 PHD_FILE: MSMg01no460_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGCGGAATT
CTTTTTCCCATGAAAAGGCTCTAAAATACTTGCTCACTTATTCACACAGG
TATCCCTGTTGTTACTACTATGATTCAACCAAAGGAAAAAATAAACTTGG
GAATCCTCTATTAGAAACAATGGACTCACAGGTAAATGACTAGTTGAAGA
AGTTGTTTTTTTTTTTTTTTTCAGGAATGTTTGTTCTCAATTGAGTCGTT
AAAGGCTCAGATAAGTATCAAAGTATAGTCAGATAAAAAAACAGTGCAGC
AAATATTTATTGTGCCTACCCCTATCACCAGGGCAATAAAATACTGCATT
TTGTTAGGGTCTGTAAGACTCCAAATGCCATGCACTGTTTGAGTTGAGCA
AAGATTGTGCCATCTCACAGATATGGAGATGGGGAAGCTAAGCCCAAGGA
CTGATCAAGCTGAGTTCCAGTTGAAATATTTCCTTGTGCTGCAGCCAACT
ATTTTTATGTGCACTCACATGGTATGCAGTCTTAGGGTTCATTTTTATTT
ATTTATTTATTTTTTTATTGTTTTGTTTAGCTTTGTTTTCTCTCTCTCTC
TCTTTTTAATTAGGTATTTATTTCATTTACATTTCCAATGCTATGCCAAA
AGTCCCCTACACGCTCTCCTACGAATTCTTCCACCCACCCACTCTCACTT
CTTGGCCCTGA
GACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATAGAGTCTTTAATTTCTTTCTTTATTT
CTTCCCTGACCAAGATATCATTGAGTAGAGAGATGTTAAGTTCCATGAAT
ATTTAGGCTTTCTGATGTTTGTTTCATTACTAAAGTCCAGCCTTATTCTG
TGGTGATCTGATCGAATACATGGTATTATTTCAATCTCCTTATATCTTTT
GAGACTTGTTTGTGTCCAATTTGGAGAAGATATCATGATATGCTGAGAAG
AAGGTATATTCTCTTGTTATGGGGTGAAATATATCTATTAATTGCATATG
GTTAATTGTAGGAAGCCATTTCAGGCTGTAAACAGGCCAGCCAGATGGAA
GTCTGCTCTAGGTAGTAAACAAGCCCATGTTTGGTAGATGGCCAGCCCTT
AATCCCTGATTGGCTGAGCAAGCCTGCCTGGTGAGGTGATGTGACCTGTG
GTGATTGGTGGGGGCGTGGTTGTGACTAGAGTGAAAAAACAAAAAACTAA
ATCTAAAAAAAACCAAAAAAACAAAAAAAAAACACTTGTAACTAGAGAAG
CTGGGGTTATTTACAAAGGTAGCTTCCTTGATTAAACTGCTTAAAGTAAG
AACGGTGGTTGAGTCTTTCTTACTTGGCCACCTGATACTCTATTGTCTTA
TATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_c09.b1 MSMg01no460_c09.b1 CHROMAT_FILE:
MSMg01no460_c09.b1 PHD_FILE: MSMg01no460_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:18 2005
         (350 letters)



>mm_chr15_70300672_70301421
          Length = 750

 Score =  625 bits (323), Expect = 0.0
 Identities = 339/349 (97%), Gaps = 9/349 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctacccctatcaccagggcaataaaatactgcattttgttagggtctgtaagactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctacccctatcaccagggcaataaaatactgcattttgttagggtctgtaagactcc 260

                                                                       
Query: 61  aaatgccatgcactgtttgagttgagcaaagattgtgccatctcacagatatggagatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgccatgcactgtttgagttgagcaaagattgtgccatctcacagatatggagatgg 320

                                                                       
Query: 121 ggaagctaagcccaaggactgatcaagctgagttccagttgaaatatttccttgtgctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagctaagcccaaggactgatcaagctgagttccagttgaaatatttccttgtgctgc 380

                                                                       
Query: 181 agccaactatttttatgtgcactcacatggtatgcagtcttagggttcatttttatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccaactatttttatgtgcactcacatggtatgcagtcttagggttcatttttatttat 440

                                                                       
Query: 241 ttatttatttttttattgttttgtttagctttgttttctctctctctctctttttaatta 300
           ||       ||||||||||||||||||| ||||||||||||||||||||  |||||||||
Sbjct: 441 tt-------tttttattgttttgtttagttttgttttctctctctctct--ttttaatta 491

                                                            
Query: 301 ggtatttatttcatttacatttccaatgctatgccaaaagtcccctaca 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggtatttatttcatttacatttccaatgctatgccaaaagtcccctaca 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)