BAC Information

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BAC

Clone NameMSMg01-460P07
Chromosome15 (Build37)
Map Location 13,196,734 - 13,197,160
singlet/doubletsinglet
Overlap genenone
Upstream geneMtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
Downstream geneLOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460P07.T7 (MSMg01no460_p07.b1)MSMg01-460P07.TJ (MSMg01no460_p07.g1)
ACCAG546191AG546192
length709738
length of high quality
(start - end)
474 (65 - 538)428 (75 - 502)
definitionCHROMAT_FILE: MSMg01no460_p07.b1 PHD_FILE: MSMg01no460_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:22 2005CHROMAT_FILE: MSMg01no460_p07.g1 PHD_FILE: MSMg01no460_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAAT
TCTCATTTCGCCGATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAG
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ATTGGACATATTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAAAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCCAATGG
ATGGACCTGGAGGGTATCATCCTGAGTGAGGGTACCCATTCCTCAAAGTA
ATCCCACCATATTATACTCCCCGAAAAGTGGGATATTACCCCCCAATTCT
ATGAAACCCTCATATATAACAAACCATTTTGTTTAACCTTTGAAACCCCT
CCCAATTAT
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTAGAGGCTCTTCTTAACTTGGGAG
TTAGGTTTTAACATGTGACACTGTTGTGGGCCTTTCATATTCAAATCACA
CAACTCTCAGCCAATCATGAATGAATACTCTAACTGAAGAGTATGTCATA
TTTGTTTATCTGTTTCTCAGAGCCTGGGTTAGTGTTTGGCACAGCGGGTG
CTCCATAGATATTTATTGAATGAAAACACTATGTTCAAGGAGAGGCAGCT
AAAATTAAGAGGCATTTGAGGGGTAGTATGGAAACCTAATACAGTAGAAA
CGTCTTAAAATATATACATGTATGAAGGGAATTTAAGTGAGGTAACAAAA
TAGTGGGGGAAACAGAGTCCCAAATGGCTATCTCTTGTCATTAAATGAAG
CTTTCAGTACCAGGATTGGGTTACATCTAACTGGGTTGTTGGCCAGAGGG
GCTCCATGAGAATCCACAAAAAACCCAGGCTATTTACCAAAACTATACAT
TGTTTCTTTACAAACTGTAAACCAAAGTCTCCTTTGTTTGATGACCACAT
TCTACCTTAAGGTCCTTTGAAGAATGTAATGGTTCCCCCCAGTACCTTAC
CTTATAAACCTTTCTTCCTGGGGGGTTCCCCTGGNCCTGTGTGCACAGTA
AACGTAGTCTCTTCACTCTCCTCTTAAGTTAATATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_p07.g1 MSMg01no460_p07.g1 CHROMAT_FILE:
MSMg01no460_p07.g1 PHD_FILE: MSMg01no460_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:22 2005
         (428 letters)



>mm_chr15_13196533_13197360
          Length = 828

 Score =  795 bits (411), Expect = 0.0
 Identities = 423/427 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttagaggctcttcttaacttgggagttaggttttaacatgtgacactgttgtgggccttt 61
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 202 ttagaggctcttcttatcttgggagttaggttttaacatgtgacactgtcgtgggccttt 261

                                                                       
Query: 62  catattcaaatcacacaactctcagccaatcatgaatgaatactctaactgaagagtatg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catattcaaatcacacaactctcagccaatcatgaatgaatactctaactgaagagtatg 321

                                                                       
Query: 122 tcatatttgtttatctgtttctcagagcctgggttagtgtttggcacagcgggtgctcca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcatatttgtttatctgtttctcagagcctgggttagtgtttggcacagcgggtgctcca 381

                                                                       
Query: 182 tagatatttattgaatgaaaacactatgttcaaggagaggcagctaaaattaagaggcat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tagatatttattgaatgaaaacactatgttcaaggagaggcagctaaaattaagaggcat 441

                                                                       
Query: 242 ttgaggggtagtatggaaacctaatacagtagaaacgtcttaaaatatatacatgtatga 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgaggggtagtatggaaacctaatacagtagaaacgtcttaaaatatatacatgtatga 501

                                                                       
Query: 302 agggaatttaagtgaggtaacaaaatagtgggggaaacagagtcccaaatggctatctct 361
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 502 agggaatctaagtgaggtaacaaaatagtgggggaaacagagttccaaatggctatctct 561

                                                                       
Query: 362 tgtcattaaatgaagctttcagtaccaggattgggttacatctaactgggttgttggcca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtcattaaatgaagctttcagtaccaggattgggttacatctaactgggttgttggcca 621

                  
Query: 422 gaggggc 428
           |||||||
Sbjct: 622 gaggggc 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)