BAC Information

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BAC

Clone NameMSMg01-461E03
Chromosome15 (Build37)
Map Location 27,627,143 - 27,627,381
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxl7, LOC622531, LOC625311, Ank, BC087945, LOC100040622, BC052328
Downstream geneTrio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461E03.T7 (MSMg01no461_e03.b1)MSMg01-461E03.TJ (MSMg01no461_e03.g1)
ACCAG546423AG546424
length7341,466
length of high quality
(start - end)
239 (83 - 321)---
definitionCHROMAT_FILE: MSMg01no461_e03.b1 PHD_FILE: MSMg01no461_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:47 2005CHROMAT_FILE: MSMg01no461_e03.g1 PHD_FILE: MSMg01no461_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTCATCTCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXGCCGCGGAATTCTCTTTTTCCGACCTCTCCCACCCCCCCTCCGTCTT
CTGATGAAATCTTTCTAAGAAATCTCCCTCCTACTTTCGTGTCCTTTTCT
GATGTACGTGCAACCCATTGATACTAAGACTGATAGAGCCCACGATTTCC
AGTCTGCTTTCTTTATTTTACTTACATGGCAGATGTGCAGGGGTGGCCAC
AACACAGCTCCCATCCCAGTGCTGTTCTGTGGTCCTGCTTTTCCATCCTC
TGTGTCTTCTCTGTGGTTTATTTCTTTTTATTCACATGTCCAGCGTATGA
TGCTCAGTATGTCAGTGCTGCCATGCTAGAACTCTGAAGAAAATGGTGAG
CATTTGATTCAGTGATTTGATCTCTTGACCATTGTCCTCAGAAAGGATTG
TTGTATATCATGCATAGTCCTGTTTGCCTTCACCGTGTGTTCCATGAGGA
GTTCCCCTTCCCCCCTTGTTACCTGCTCCTTCCTCTTGTTTCTGTTGTTC
TCTACGATCCCTGTTCTCGTTTTCTTTTTCATACCTTTGATTCCATTTCG
TCCTCCTTTTCTTTGCCACCCCTCTTATTTCCCCCTTCTGAAACTTTCCT
ACATTCTCCCCGTCCCTTAAATTTCCCCGTATCTTTTTTTCTCCTCCCTT
TCTTTTGCTTTTTTTTTTACCCGCCTCTTCTCTG
CGCCGAGGTCGTGTAGAGGTCGNCACACCAGAGTTAGTACGACTCCATCG
CACAGATCACTCCGCGTACGCTCAGCTGTTATATGTCTCTCGTCTAGCTC
CTNTATATGATACATGCGTCTATAGACCTGCGTAACGAGCGTAGCGNCGA
TGACTTATNACATAACGATTACTGATGTATGTAAACACTATATGTAACTG
TGANACATTGTAGAGGTATTGTACGNACTATATATGAACGGTCGACTGAG
TACANCACTATACTCTGTCCTCGGGCTGCTCATATATGCACCGGTATGCA
TATAGCAGAGCNTACACCGATGACAGTGTTGGCGGGTCTCTGAATTNCGA
TACATGACGACTTAGATGACGATGCTCATAGTAGCAAGTACTAAAGCACG
AATATTAGCCGTATATGTANCGTGATGTACTAGGCATACCTAATGTATAG
TATAGTGCAGTTTGACGGACATGATTATACTCGTGCGCACATGAGTGTCG
TAAGACTTGACACAGCAGCACTGATGATCGATACTGCGTAATACCGCATA
CCTATTCGACGCGACGCGNTCTATCGATCTATAGTGAAGCCGCACGATAA
CTTTAGCCTGCTTAGATAACGCCGCGCTGATCTAGTCACGCGATCAACTC
GACTCACGTAGCGATATTCGCATTTATATACGTCGCTTATATGTCATGAG
ACGAATATTATCGAAGACGAANTAGCGTACGTTTAACGTTACCATAACAT
AGCAGCGTACTCAGCGCTCATAGATTGCTTATTGCGTGNGTATCTACCTC
GACTCACCCNCTCTCGAGCCGTCTATAATGACACGTCTACGATATGCGAC
ACACTTGACGTCATCTATCGAGCGCCTATTGCGCGTCAATACGTATATAT
ACAGGGACGATATACTCGTATAGCTATATATTCAGCGCACATTCTGCATC
GCTCTGTGCGCTATTATTGTATTATTATTGCGCGTGCGCCACCTCTGCCG
TTCTCAGCATGTGATCGACGATAGATATCGTTACCATAGATATATGAGAT
GTAACGCGTCGGCGACAGACGCGCGCCACTGTATGNCTTTATGTATAACC
GGCGCTCGTTACCCGTACGACTTATATCTAGCGTGGTTCCCACAACGCAT
CATGTATGCTACCGCACGTATTATATAGACTTGTGCGCGATCGCCGTTTC
AGCCGGACTGGCGCGTGGTNATCTCAGCTTACTATAGTGCAGTATCCCGT
ACTTTACTGTCTNCTACGATGATGACGAGTATGATATGCGGTCGATGCGA
CGTGCCGTGCGGTCCATACGCACNGATATATGGATATCCTTATGTGTGAT
TTATGATCGCCGACGCGCTTGTCGTCGCTGCACACAGCGCCCACGCGAGT
GTTATGAATTGACTTCATACTAGTCCCACCGCTTAGTTGTATCGCCATCA
CGCTCATCTGATAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_e03.b1 MSMg01no461_e03.b1 CHROMAT_FILE:
MSMg01no461_e03.b1 PHD_FILE: MSMg01no461_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:47 2005
         (239 letters)



>mm_chr15_27626943_27627581
          Length = 639

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%), Gaps = 2/240 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaccccccctccgtcttctgatgaaatctttctaagaaatctccctcctactttcgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaccccccctccgtcttctgatgaaatctttctaagaaatctccctcctactttcgtgt 260

                                                                       
Query: 61  ccttttctgatgtacgtgcaacccattgatactaagactgatagagcccacgatttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttttctgatgtacgtgcaacccattgatactaagactgatagagcccacgatttccag 320

                                                                       
Query: 121 tctgctttctttattttacttacatggc-agatgtgcaggggtggccacaacacagctcc 179
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 321 tctgctttctttattttacttacatggcta-atgtgcaggggtggccacaacacagctcc 379

                                                                       
Query: 180 catcccagtgctgttctgtggtcctgcttttccatcctctgtgtcttctctgtggtttat 239
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 380 catcccagtgctgttctgtggtcctgattttccatcctctgtggcttctctgtggtttat 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)