Query= MSMg01no461_k04.b1 MSMg01no461_k04.b1 CHROMAT_FILE:
MSMg01no461_k04.b1 PHD_FILE: MSMg01no461_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:18 2005
(530 letters)
>mm_chr15_16586773_16587702
Length = 930
Score = 944 bits (488), Expect = 0.0
Identities = 519/530 (97%), Gaps = 4/530 (0%)
Strand = Plus / Plus
Query: 1 gtcctatcggtgtgtgagtaggagtgatgtagctgggtcagattgtcattctacttttac 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtcctatgggtgtgtgagtaggagtgatgtagctgggtcagattgtcattctacttttac 264
Query: 61 tattttgtgaagcttctctattaatttctttgtttgtgggtctagcgtacacatccacca 120
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 tattttgtgaagcctctctattaatttctctgtttgtgggtctagcgtacacatccacca 324
Query: 121 cactggctagtctttcctgaaagcatttccagcttgggttgttatttggtttcttgatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactggctagtctttcctgaaagcatttccagcttgggttgttatttggtttcttgatta 384
Query: 181 aagctattctactgaggcttgatgaaatccctttttaaaaaaattttcatttgacttatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagctattctactgaggcttgatgaaatccctttttaaaaaaattttcatttgacttatg 444
Query: 241 attttgaatgttaagcataagtttagatagttatagacattttgtgtttcttcttttgct 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 attttgaatgttaagcataagcaaagatagttatagacattttgtgtttcttcttttgct 504
Query: 301 aatgatctgtgtcactaacccatttatttaacagaaatgtgttttcattgtgtgatatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgatctgtgtcactaacccatttatttaacagaaatgtgttttcattgtgtgatatgc 564
Query: 361 acacacataaacatatctacatacacacacacacacagagagagagagagagagagactg 420
||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct: 565 acacacataaacatatctacatacacacacacaca--gagagagaga-a-agagagactg 620
Query: 421 agtttgtcagttctgtatgaagtatacatgaaaatatttttattttttgttatctgttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttgtcagttctgtatgaagtatacatgaaaatatttttattttttgttatctgttca 680
Query: 481 cttgtctgaatatttacttttatgaattgagatttttatttataaataat 530
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 cttgtctgaatatttacttttatgaattgagatttttatttttaaataat 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_k04.g1 MSMg01no461_k04.g1 CHROMAT_FILE:
MSMg01no461_k04.g1 PHD_FILE: MSMg01no461_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:19 2005
(620 letters)
>mm_chr15_16773656_16774675
Length = 1020
Score = 1183 bits (612), Expect = 0.0
Identities = 618/620 (99%)
Strand = Plus / Minus
Query: 1 acggaggagaatcgttttgacaatttggaaataagctcactttttatcattaacagcgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 acggaggagaatcgttttgacaatttggaaataagctcactttttatcattaacagcgca 761
Query: 61 aactccctactctatttttagatattcccctcagcaaaaatgatgtcccatgaattgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aactccctactctatttttagatattcccctcagcaaaaatgatgtcccatgaattgtca 701
Query: 121 aagcacagagataatattctttcacatagcagccaagttctattttcaacacagaattag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aagcacagagataatattctttcacatagcagccaagttctattttcaacacagaattag 641
Query: 181 aacattgtgagttaccaattaataataagtacaatgaattaccacaaatgaccaggaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aacattgtgagttaccaattaataataagtacaatgaattaccacaaatgaccaggaaaa 581
Query: 241 atgcattaaacatctaacactgaagaaaagtcatttctgtgtcctagaaaatggtttata 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atgcattaaacacctaacactgaagaaaagtcatttctgtgtcctagaaaatggtttata 521
Query: 301 aaatcaatagtattttattgatttgacttcattgaatttcaagcaactatctgaaacaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaatcaatagtattttattgatttgacttcattgaatttcaagcaactatctgaaacaga 461
Query: 361 ctacttgcataaaatttctgtgggaatgatacctgaaaagaaaatataccctcagatggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctacttgcataaaatttctgtgggaatgatacctgaaaagaaaatataccctcagatggg 401
Query: 421 tgacataaaaatcaaaatgcacacaatgtaactcacctgtcaactctctactcaaaaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgacataaaaatcaaaatgcacacaatgtaactcacctgtcaactctctactcaaaaatt 341
Query: 481 tatgctttcattttatgttgtacaatcaaacattaaacacaataataaaatctcgagttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 340 tatgctttcattttatgttgtacaatcaaacattaaacacaataataaaatcttgagttt 281
Query: 541 tttaatatgcaatccatagaggacccaattatagatgttacagctactggttgtgtcact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tttaatatgcaatccatagaggacccaattatagatgttacagctactggttgtgtcact 221
Query: 601 atgtcaaattctacctcatt 620
||||||||||||||||||||
Sbjct: 220 atgtcaaattctacctcatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
