BAC Information

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BAC

Clone NameMSMg01-461K24
Chromosome15 (Build37)
Map Location 72,487,975 - 72,488,369
singlet/doubletsinglet
Overlap gene1810044A24Rik
Upstream geneLOC100040847, Col22a1, Kcnk9
Downstream geneLOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461K24.T7 (MSMg01no461_k24.b1)MSMg01-461K24.TJ (MSMg01no461_k24.g1)
ACCAG546752AG546753
length739754
length of high quality
(start - end)
546 (45 - 590)395 (82 - 476)
definitionCHROMAT_FILE: MSMg01no461_k24.b1 PHD_FILE: MSMg01no461_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:23 2005CHROMAT_FILE: MSMg01no461_k24.g1 PHD_FILE: MSMg01no461_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTATTTATCTCTGTACTCCACTTTTTTAATAGGGTTATTTGCTTC
TCTGGAGTCTCCCTTCTTGAGTTCTTTGTATATTTTGGATATTAGTCCTC
TATTGGATGTAGGATTGGTAAATATCTTTTCCCAATCTGTGGGTTGCCAT
TTTGTTCTATTGACAGCGTCCTTTGCCTTACAGAAGCTTTTTAGTTTTAT
GAGGTCCCATTTGTCCATTATTAATCTTAGAGCACAAGCCATTGGTGTTC
TGTTCAGGAAAATTTCCCCTGTGACCATATGTTCAATGCTCTTTTCCACT
CTCTCTTCTATTTGATTCAGGGTAACTGGTTTTATGTTAAGGTCCTTGAT
CCACTTGGACTTGAACTTTGTACAAGGAGATAAGAATGGGTCAATTTGCA
TTCTTCTACATTCAGACTGACAGGTGAACCAGTACCATTTGTTGAAAGTG
CTCTCTTTTTCCCCCCACTGGATATTTTTAGCTCCTTTGTCAAAAATCAA
GTGACCATAAGTGTATGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GATCTACTTGCCTATCTCTGTACCAATACCATGCCAGTTTATCACTATTG
CTCTATAGTGNATCTTGAAGTCAGGGATGGTGATTCCCCCCCAAATTCTT
TTATTTGTTGAAATACCTTTTCCCATCCCGGGAGTTTTA
TTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAGCCCGGAAGATCCT
TCCTGGCTCAGGATTCAGGACCGAGAGCGCCCGCGCTGTCTCAGCCCCTG
TGCGGCAGGCCTGGGGCCATTGTGCATGTTCTCGCTCAGTCTACCTACCT
GTCTCCACATCTGCCCAGCTGGAGCTATGCATCCTTGGCCCTCCCCATCT
ATGCCTCGAAGATTCTATTCTCATAGCCAAGAGGCATCCTTGCTGACAGC
CCTGGGGACGTGGTAGGAGGCAGAATAAAGGCCCGATCTCTGCTGCTGTT
GCTGTAAACCAATCCCAGATGACGCAGGGGAGACCCGCTGCCAAGGCTGC
TTGCTTTAATTAGGGGGGAGATTGATAAGAGCTGTCAGGGCAGAATGGAG
AGACTCTAAGCCTCACTGGTTTGCTGAGACATGAGAGGGAAGGCTGAAGA
TTAAAAAACAGAAAACTCCCCTCTGCAAAGCTCACTATGGGGTTGAGCCC
GAGAAAAGAACAGCCCGTTACGAAAGAATTGTGCCCAACTGCCCAGTGGG
CGCTCCCTCCCCAAAGTTGGTTTTGTCTCTGGGGTTTCTTTTTCAACCTC
CCCTCTTTTTTTCTTCCTCCTATAAACCCTCCCCTCTCCCCAGTGCTTCC
CCGCCCTTTTTTCCTCCACTCTTATCTTCTATCTCTCTACTTTTACTCCT
CCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_k24.g1 MSMg01no461_k24.g1 CHROMAT_FILE:
MSMg01no461_k24.g1 PHD_FILE: MSMg01no461_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:23 2005
         (395 letters)



>mm_chr15_72487775_72488569
          Length = 795

 Score =  741 bits (383), Expect = 0.0
 Identities = 392/395 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagagcccggaagatccttcctggctcaggattcaggaccgagagcgcccgcgctgtct 60
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccagagcccggaaggtccttcctggctcaggattcaggaccgagagcgcctgcgctgtct 260

                                                                       
Query: 61  cagcccctgtgcggcaggcctggggccattgtgcatgttctcgctcagtctacctacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcccctgtgcggcaggcctggggccattgtgcatgttctcgctcagtctacctacctg 320

                                                                       
Query: 121 tctccacatctgcccagctggagctatgcatccttggccctccccatctatgcctcgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccacatctgcccagctggagctatgcatccttggccctccccatctatgcctcgaag 380

                                                                       
Query: 181 attctattctcatagccaagaggcatccttgctgacagccctggggacgtggtaggaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attctattctcatagccaagaggcatccttgctgacagccctggggacgtggtaggaggc 440

                                                                       
Query: 241 agaataaaggcccgatctctgctgctgttgctgtaaaccaatcccagatgacgcagggga 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagaaaggcccgatctctgctgctgttgctgtaaaccaatcccagatgacgcagggga 500

                                                                       
Query: 301 gacccgctgccaaggctgcttgctttaattaggggggagattgataagagctgtcagggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacccgctgccaaggctgcttgctttaattaggggggagattgataagagctgtcagggc 560

                                              
Query: 361 agaatggagagactctaagcctcactggtttgctg 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 561 agaatggagagactctaagcctcactggtttgctg 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)