BAC Information

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BAC

Clone NameMSMg01-461L03
Chromosome15 (Build37)
Map Location 8,988,277 - 8,988,725
singlet/doubletsinglet
Overlap geneRanbp3l
Upstream geneWdr70, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619
Downstream gene1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461L03.T7 (MSMg01no461_l03.b1)MSMg01-461L03.TJ (MSMg01no461_l03.g1)
ACCAG546758AG546759
length765728
length of high quality
(start - end)		455 (49 - 503)---
definitionCHROMAT_FILE: MSMg01no461_l03.b1 PHD_FILE: MSMg01no461_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:23 2005CHROMAT_FILE: MSMg01no461_l03.g1 PHD_FILE: MSMg01no461_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTAAGGGCTCCCCATTTCTTTGAGGTCACTAGTCAGTGGTGG
GATGAAAACTGGAACCCTGCCTGTGCTGTCTGACAAGTGATCTCCTAGTG
TACATTAGAAACATTGTAGTCCACCCTCGGGTTTATCTACAGAAAGCAGT
TATGTTCACATGAGACATTTTACCCTGAGAAACCATGGCTTACTCTAAAT
TGTTCCTTACTTAGTCTTGACTGCAGTGTTCCACACTCTTGGCCGGCCGT
GTCGTTCAGTCGCAAAATCCCTTGTTCTCTTTCACTCCAGGATTCTGTGG
CTTTGTTGAATACAAAGATCTTGCAGTTGATCTAAATGACAGTTTTTATA
AATGTCCAACACATCAATTTTTTTTTCAGATTAAATTCTTTCTTGTGCCC
TGACACTATTAGACCTGGCTTATCTTGTACTAAATCATTTTGTTAATGAT
AAATAAACTAGAGCTTGAGATTTATTTAACTTTTTAGAACATGCAATCCC
TGAATAGTTTAAACTGCATATTCCTAGAATAGGAATGAAAAGGGTCCCCT
ACCTTGGCTTTTCCATATTCCTACTTTCGTGATTACAGGGCCCAATAGGT
TGCATTTTATTTTATTCCCTGTGTTGTATTATTTTACTCCATCTTCTCTC
CCTTGTTTCTTCATTTCTTGTTTATATTATCTCTTATTCTATATTTTGCC
GTCCCCTGCCTGTTT

AGGGAAGAGGNNAGAAAGAAAGNNNNNCAGGGCCAAAATAAATTTCCNNN
NNCCCCNCNCCCCCCNNCCAATGATATGNNTANXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATG
GGGCTATAAAAATGAGTTTCTGGGGGGGGGGGGGGCATCCTACAATGGTA
TGGTTTGTGGGCAAGGGATGTCCCCTTTCTAANCAAGGAAGGCCCTTTTT
TAACCAAGGGAAGGGCCCAACTGGAAAAGGGGAACCCTTGGAAAGGGGGA
AAGAAAACCCCCNCCAAAAATTTTTAAACCCCTCTCAAAAAGGGGGCCTT
TGGGAAATTTCCAAAAAAAAAACCCCCCCCTAAAAATTGGGGGGGGGTTT
TTTTTTTCCAAAAAAANATCGGNTCTTTTTTNTTGTGGGCAAAANNNNNN
CTGANNNGNNGGGTCGGGNNNNNNNCTNNNNNNNNNNNNATAATGNTTCG
TAGGTAGTTTGTGGTTTCGGTGTTTTTGNNNTGGTGGGCATGGGGGGGGG
GGGGGATGTCTNNNTGGTATACTNNNNANANAAAAGGGGNNNTNTTATCN
NNNNAGAATTAAACANTTGATNTCTTTTNNTTTTGTTAATATACACTTTG
TTTACAATTATATGGTTTATTCTTNAATGAATACATGGNTCNNGGGTCTT
TTTTTANTTTTTGTTATAAAAAAAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_l03.b1 MSMg01no461_l03.b1 CHROMAT_FILE:
MSMg01no461_l03.b1 PHD_FILE: MSMg01no461_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:23 2005
         (455 letters)



>mm_chr15_8988073_8988925
          Length = 853

 Score =  797 bits (412), Expect = 0.0
 Identities = 441/454 (97%), Gaps = 8/454 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaagggc---tccccatttctttgaggtcactagtcagtggtgggatgaaaac 61
           ||||||||||||||   |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaattcttaagggcaagt---catttctttgaggtcactagtcagtggtgggatgaaaac 597

                                                                       
Query: 62  tggaaccctgcctgtgctgtctgacaagtgatctcctagtgtacattagaaacattgtag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tggaaccctgcctgtgctgtctgacaagtgatctcctagtgtacattagaaacattgtag 537

                                                                       
Query: 122 tccaccctcgggtttatctacagaaagcagttatgttcacatgagacattttaccctgag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tccaccctcgggtttatctacagaaagcagttatgttcacatgagacattttaccctgag 477

                                                                       
Query: 182 aaaccatggcttactctaaattgttccttacttagtcttgactgcagtgttccacactct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaaccatggcttactctaaattgttccttacttagtcttgactgcagtgttccacactct 417

                                                                       
Query: 242 tggccggccgtgtcgttcagtcgcaaaatcccttgttctctttcactccaggattctgtg 301
            ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 416 cggccggccgtgtcgttcagtcgcaaaatcccttggcctctttcactccaggattctgtg 357

                                                                       
Query: 302 gctttgttgaatacaaagatcttgcagttgatctaaatgacagtttttataaatgtccaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gctttgttgaatacaaagatcttgcagttgatctaaatgacagtttttataaatgtccaa 297

                                                                       
Query: 362 cacatcaatttttttttcagattaaattctttcttgtgccctgacactattagacctggc 421
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 296 cacatcaa--tttttttcagattaaattctttcttgtgccctgacactattaggcctggc 239

                                             
Query: 422 ttatcttgtactaaatcattttgttaatgataaa 455
           |||||||||| |||||||||||||||||||||||
Sbjct: 238 ttatcttgtattaaatcattttgttaatgataaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 853
Length adjustment: 10
Effective length of query: 445
Effective length of database: 843
Effective search space:   375135
Effective search space used:   375135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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