BAC Information

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BAC

Clone NameMSMg01-461M16
Chromosome15 (Build37)
Map Location 84,606,850 - 84,607,050
singlet/doubletsinglet
Overlap genenone
Upstream geneMpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik
Downstream genePhf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461M16.T7 (MSMg01no461_m16.b1)MSMg01-461M16.TJ (MSMg01no461_m16.g1)
ACCAG546832AG546833
length757765
length of high quality
(start - end)
201 (317 - 517)391 (70 - 460)
definitionCHROMAT_FILE: MSMg01no461_m16.b1 PHD_FILE: MSMg01no461_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:32 2005CHROMAT_FILE: MSMg01no461_m16.g1 PHD_FILE: MSMg01no461_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCCGCTAAACGAATCCTAGTGCGACACGAGCGCNGGAATCA
TAGAATGACAACAGATACCTCCCCAGACCCACGCATGTTAAGGTTCCATG
ATAGCGGGAGATGTCTGGGAAGGAAAATGGAAGTCAGAAAGTAAAAGTCA
CTCATTGACGATTGAAGCCCAGAGTGCTGCAGAACACCGAGAGAGCTCAC
TCACTCAGCGAGCTTTGGAAATCAGCACAGCGTCTAGGAATGACCTGGAA
GGTGGTCCAGAGCATTGTTGCATGTAGATTCAGCTGGCCTGACCATCAGG
AATAGCATATTAGTCTAGGTGTGTCACCAGCGTGACTGAAGAGTATCCTG
CATTTATTTAGTATGGCCAGGACAGACCTGTGTGTGTTGATTTGGATCAC
AGTTTCCCCTGGTAACCATCCCTGCTGGTCAGCACTGTCACACCTCTATG
GCACACGAACTGGCAGGAGAACATCACCCAGGGTCACGTCTGCAAGCCCA
CGATGGCTCATCGCCAAGTTGTCTCATAGACACTGAATGATATACCAGCA
TAAAGAGTTATTACAGACTGAATGGTGTCTTGTTCGATCCACTCCCTTCC
TTCTCTTCCTCTTTTCTCCCCTCCTCCCTCTCTCTTTTTTTTTTTTCCTC
CTTCTCCCACCCATTTTCTTCCCCCCCTTCTCCTCTCTTCCTCTCTTACC
CGCCCTTATTATTTCTTTTTTTTCTTCCACCCCCCCTTCCTCTCTTTTTT
TCCTTCG
TGCTATGTGTAGCCTGGGGGCGCCTGGTTCCCGAXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTCCTCTTTTTGGGTGGATATGCGTTTGT
GTGATTGTGCATACTCAGCCTGTGAAGGTCAGGGGTCAACTGGAGGAATC
TTCCCCAGTCACTCTCCAACTTAGTTTTTGAGACAGGTCCTCTTACCAAA
CCTGGAGCTCACCTATTTGGCTGGATTGGCTGGCCAGTGAGCTTCGGGGA
TCTTCGTGTGTCGCTTGGGTGCTTGGGATAAAACAAACTCACTCTCTCTT
ATTTATTTATTTATAGACAGCATTTCTTTGTGTAGCCCTGACTCTGCCAT
GGAACTCAGTATGAAGGAGACCAGGCTTACCTCGAACTCTCGGAGCTCCG
TCTGCCTCTGTCTCCCGAGTGCTGGGATTAAAGGCTTGTGCCACCACCCA
GCTGAAGCTCCGTTCTTCATGCTTGTGTATAAAGCACTTTTCTGACTGAT
GCGGCTCCTCAGCTCCAAACCTTCTCTGGTTAGAGATGACACTAGCCCCC
AGTTGGCTTTAGGATTTATTGATCTCTCCTGCGAAAAGGCTTGCGGTATA
TATGGTAAAGCCCATTTGTTTCTTGATTCTTACGTGTTTTTTTCCTTAAT
CTCTTTTTTTCATCCTAACTTTTCACTTTCTTCCTCCTAACCGCTTTTTT
TGCCCCACGAATTTCGTTCTTTCTTTTTTTCCTGTGCTTCCCTATTCATT
TTTCCGCTCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_m16.b1 MSMg01no461_m16.b1 CHROMAT_FILE:
MSMg01no461_m16.b1 PHD_FILE: MSMg01no461_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:32 2005
         (201 letters)



>mm_chr15_84606650_84607250
          Length = 601

 Score =  373 bits (193), Expect = e-108
 Identities = 199/201 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgtgtcaccagcgtgactgaagagtatcctgcatttatttagtatggccaggacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgtgtcaccagcgtgactgaagagtatcctgcatttatttagtatggccaggacaga 260

                                                                       
Query: 61  cctgtgtgtgttgatttggatcacagtttcccctggtaaccatccctgctggtcagcact 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cctgtgtgtgttgatttggatcacagtttcccctggtgaccatccctgctggtcagcact 320

                                                                       
Query: 121 gtcacacctctatggcacacgaactggcaggagaacatcacccagggtcacgtctgcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcacacctctatggcacacgaactggcaggagaacatcacccagggtcacgtctgcaag 380

                                
Query: 181 cccacgatggctcatcgccaa 201
           |||||||||| ||||||||||
Sbjct: 381 cccacgatggttcatcgccaa 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)